Variant report

Variant	rs7115407
Chromosome Location	chr11:73869754-73869755
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10431176	0.90[ASN][1000 genomes]
rs10501415	0.87[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10898955	0.87[CEU][hapmap];0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs10898957	0.93[CHB][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10898958	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10898959	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10898960	0.87[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898961	0.94[CHB][hapmap];0.84[JPT][hapmap];0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10898962	1.00[CHB][hapmap];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10898963	0.94[CHB][hapmap];0.83[JPT][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10898964	0.85[ASN][1000 genomes]
rs10898966	0.80[CHB][hapmap];0.85[ASN][1000 genomes]
rs11235972	0.82[CHB][hapmap]
rs11235988	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11235994	0.86[CEU][hapmap];0.93[CHB][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11235995	0.86[CEU][hapmap];0.93[CHB][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11235996	0.87[CEU][hapmap];0.94[CHB][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11235997	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11235998	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11235999	0.87[CEU][hapmap];0.87[CHB][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11236000	0.86[CEU][hapmap];0.93[CHB][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11236002	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11236003	0.87[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11236005	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11236016	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11236018	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11236020	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11236026	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236027	0.86[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11236029	0.93[CHB][hapmap];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11600314	0.93[CHB][hapmap];0.83[JPT][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11601582	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11602451	0.93[CHB][hapmap];0.83[JPT][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11603981	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11604125	0.86[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11604713	0.86[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606804	0.87[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607335	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs11608147	0.86[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12222213	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12223320	0.86[CEU][hapmap];0.93[CHB][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12574038	0.86[CEU][hapmap];0.93[CHB][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12574039	0.87[CEU][hapmap];0.94[CHB][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12574047	0.86[CEU][hapmap];0.93[CHB][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12574556	0.87[CEU][hapmap];0.94[CHB][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12574650	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12574824	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12574898	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12574960	0.89[ASN][1000 genomes]
rs12575211	0.87[CEU][hapmap];0.94[CHB][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1405653	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1405654	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1474471	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1527302	0.87[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1615607	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1685333	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs17132701	0.80[ASN][1000 genomes]
rs17132715	0.87[CEU][hapmap];0.94[CHB][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1800006	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs1800849	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs1944971	0.86[CHB][hapmap];0.88[ASN][1000 genomes]
rs2091436	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2178000	0.86[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2302508	0.85[ASN][1000 genomes]
rs35826958	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3741133	0.80[CHB][hapmap];0.84[ASN][1000 genomes]
rs3814724	0.94[CHB][hapmap];0.83[JPT][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3819114	0.82[ASN][1000 genomes]
rs4019299	0.87[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4539349	0.93[CHB][hapmap];0.84[JPT][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4565925	0.93[CHB][hapmap]
rs55823944	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56298621	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56366246	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57117016	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59109060	0.94[ASN][1000 genomes]
rs59605334	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60834556	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61901208	0.81[EUR][1000 genomes]
rs61901211	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61901238	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61901245	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61901246	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61901247	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61901248	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61901252	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61902362	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6592547	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7110734	0.86[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7115146	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7119710	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7125032	0.86[CEU][hapmap];0.93[CHB][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7125400	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72341762	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7935920	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7941203	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7941525	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7951239	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7951290	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951743	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7952669	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs826035	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs826044	0.81[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73802200-73880800	Weak transcription	Esophagus	oesophagus
2	chr11:73804000-73880800	Weak transcription	Aorta	Aorta
3	chr11:73817600-73880800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:73825000-73880400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr11:73825800-73878600	Weak transcription	Fetal Brain Male	brain
6	chr11:73829400-73873800	Weak transcription	Right Ventricle	heart
7	chr11:73844800-73880200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr11:73847200-73869800	Weak transcription	Fetal Kidney	kidney
9	chr11:73847800-73870800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr11:73847800-73875000	Weak transcription	Fetal Lung	lung
11	chr11:73847800-73875200	Weak transcription	Left Ventricle	heart
12	chr11:73847800-73880800	Weak transcription	Spleen	Spleen
13	chr11:73848000-73873000	Weak transcription	GM12878-XiMat	blood
14	chr11:73849600-73873800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:73849600-73875000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr11:73850200-73870800	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr11:73850200-73879600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:73850600-73869800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr11:73850800-73869800	Weak transcription	Dnd41	blood
20	chr11:73850800-73870000	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr11:73850800-73871000	Weak transcription	Liver	Liver
22	chr11:73850800-73872200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr11:73850800-73875400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:73850800-73875600	Weak transcription	Brain Germinal Matrix	brain
25	chr11:73851000-73871400	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr11:73852000-73877000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:73852600-73870000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr11:73852600-73873800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr11:73852800-73869800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:73852800-73877200	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr11:73852800-73878000	Weak transcription	Psoas Muscle	Psoas
32	chr11:73853200-73869800	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr11:73853400-73875200	Weak transcription	Adipose Nuclei	Adipose
34	chr11:73853800-73875200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr11:73854000-73881000	Weak transcription	Lung	lung
36	chr11:73858600-73873800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr11:73858600-73880200	Weak transcription	NHLF	lung
38	chr11:73858600-73880800	Weak transcription	Ovary	ovary
39	chr11:73858600-73881000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr11:73859000-73880000	Weak transcription	HepG2	liver
41	chr11:73860000-73873000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr11:73860000-73880600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:73860800-73869800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr11:73861000-73874400	Weak transcription	Fetal Intestine Large	intestine
45	chr11:73862200-73877400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr11:73864000-73875800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr11:73864600-73871400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr11:73864800-73873800	Weak transcription	Brain Hippocampus Middle	brain
49	chr11:73865000-73871600	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr11:73865200-73869800	Weak transcription	Brain Angular Gyrus	brain

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