Variant report

Variant	rs61901208
Chromosome Location	chr11:73786085-73786086
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73779673..73783473-chr11:73783793..73787357,3	K562	blood:
2	chr11:73780196..73782552-chr11:73785196..73788423,3	MCF-7	breast:
3	chr11:73679761..73681646-chr11:73783765..73786370,2	K562	blood:
4	chr11:73691101..73695528-chr11:73777647..73786599,14	MCF-7	breast:
5	chr11:73779701..73782835-chr11:73783436..73786743,4	K562	blood:

Variant related genes	Relation type
ENSG00000168014	Chromatin interaction
ENSG00000175567	Chromatin interaction
ENSG00000255847	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10431176	0.82[EUR][1000 genomes]
rs10501415	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10898955	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10898957	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10898958	0.81[ASN][1000 genomes]
rs10898959	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10898960	0.83[EUR][1000 genomes]
rs10898962	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11235988	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11235994	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11235995	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11235996	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11235997	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11235998	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11235999	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11236000	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11236002	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11236003	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11236005	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11236016	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11236018	0.84[EUR][1000 genomes]
rs11236020	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11236026	0.83[EUR][1000 genomes]
rs11236027	0.82[EUR][1000 genomes]
rs11236029	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11601582	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11603981	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11604125	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11604713	0.83[EUR][1000 genomes]
rs11606804	0.83[EUR][1000 genomes]
rs11607335	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11608147	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12222213	0.83[EUR][1000 genomes]
rs12223320	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12574038	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12574039	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12574047	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12574556	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12574824	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12574898	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12574960	0.82[EUR][1000 genomes]
rs12575211	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1474471	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1527302	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1615607	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17132701	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17132715	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2091436	0.83[EUR][1000 genomes]
rs2178000	0.83[EUR][1000 genomes]
rs35826958	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4019299	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4537786	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4565925	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55823944	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56298621	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56366246	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57117016	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59109060	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59605334	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60834556	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61901211	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61901216	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61901238	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61901245	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61901246	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61901247	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61901248	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61901252	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6592547	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7110734	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7115407	0.81[EUR][1000 genomes]
rs7119710	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7125032	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7125400	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72341762	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7935920	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7941203	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7941525	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7951239	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7951290	0.83[EUR][1000 genomes]
rs7951743	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7952669	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs826035	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs826044	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73730800-73800800	Weak transcription	Fetal Heart	heart
2	chr11:73750800-73800400	Weak transcription	HMEC	breast
3	chr11:73753200-73796400	Weak transcription	Small Intestine	intestine
4	chr11:73753200-73804600	Weak transcription	Colonic Mucosa	Colon
5	chr11:73760000-73802600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr11:73768800-73798200	Weak transcription	NHEK	skin
7	chr11:73769000-73788600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:73771200-73789000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:73777000-73788400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:73777600-73788600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:73777600-73818600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:73778000-73790600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:73778200-73789800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:73778200-73791000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:73778400-73790000	Strong transcription	Fetal Thymus	thymus
16	chr11:73778800-73790200	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr11:73778800-73790400	Strong transcription	Fetal Muscle Leg	muscle
18	chr11:73778800-73790400	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr11:73778800-73792800	Strong transcription	Primary B cells from cord blood	blood
20	chr11:73779000-73790200	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr11:73779000-73792600	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr11:73779200-73791000	Strong transcription	Fetal Muscle Trunk	muscle
23	chr11:73779600-73790800	Strong transcription	Primary T cells from cord blood	blood
24	chr11:73779800-73789000	Weak transcription	HepG2	liver
25	chr11:73780200-73790400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr11:73780200-73790800	Strong transcription	Primary B cells from peripheral blood	blood
27	chr11:73780400-73787000	Strong transcription	Fetal Intestine Large	intestine
28	chr11:73780600-73790000	Strong transcription	Hela-S3	cervix
29	chr11:73780600-73790400	Strong transcription	Dnd41	blood
30	chr11:73781200-73786400	Strong transcription	Liver	Liver
31	chr11:73781200-73795800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr11:73781400-73790200	Strong transcription	Duodenum Mucosa	Duodenum
33	chr11:73781800-73786400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr11:73781800-73849200	Weak transcription	Stomach Mucosa	stomach
35	chr11:73782200-73796400	Weak transcription	Right Ventricle	heart
36	chr11:73782600-73789000	Weak transcription	Pancreas	Pancrea
37	chr11:73782600-73823800	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr11:73782800-73790400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr11:73782800-73790600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr11:73782800-73795400	Weak transcription	K562	blood
41	chr11:73783200-73789800	Strong transcription	Adipose Nuclei	Adipose
42	chr11:73783400-73789800	Strong transcription	Brain Angular Gyrus	brain
43	chr11:73783600-73790400	Strong transcription	Placenta	Placenta
44	chr11:73783800-73786600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr11:73784000-73786200	Strong transcription	Thymus	Thymus
46	chr11:73784000-73786800	Strong transcription	Fetal Stomach	stomach
47	chr11:73784200-73796600	Weak transcription	Psoas Muscle	Psoas
48	chr11:73784200-73801000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr11:73785000-73789000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr11:73785200-73786200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links