Variant report

Variant	rs59109060
Chromosome Location	chr11:73875193-73875194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73875087..73876757-chr11:73880619..73882192,2	K562	blood:
2	chr11:73874779..73879639-chr11:73880339..73885653,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214517	Chromatin interaction
ENSG00000168014	Chromatin interaction

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10431176	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10501415	0.82[ASN][1000 genomes]
rs10898955	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10898957	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10898958	0.87[ASN][1000 genomes]
rs10898959	0.89[ASN][1000 genomes]
rs10898960	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10898961	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10898962	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10898963	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10898964	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10898966	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11235994	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11235995	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11235996	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11235997	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11235998	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11235999	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11236000	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11236002	0.82[ASN][1000 genomes]
rs11236003	0.85[ASN][1000 genomes]
rs11236005	0.85[ASN][1000 genomes]
rs11236016	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11236018	0.82[ASN][1000 genomes]
rs11236020	0.89[ASN][1000 genomes]
rs11236026	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11236027	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11236029	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11600314	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11601582	0.88[ASN][1000 genomes]
rs11602451	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11603981	0.82[ASN][1000 genomes]
rs11604125	0.88[ASN][1000 genomes]
rs11604713	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11606804	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11607335	0.81[ASN][1000 genomes]
rs11608147	0.85[ASN][1000 genomes]
rs12222213	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12223320	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12574038	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12574039	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12574047	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12574556	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12574650	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12574824	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12574898	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12574960	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12575211	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1405653	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1405654	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1474471	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1527302	0.82[ASN][1000 genomes]
rs17132701	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17132715	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1944971	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2091436	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2178000	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2302508	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35826958	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3741133	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3814724	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4019299	0.89[ASN][1000 genomes]
rs4537786	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4539349	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4565925	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55823944	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56298621	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56366246	0.82[ASN][1000 genomes]
rs57117016	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59605334	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60834556	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61901208	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61901211	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61901216	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61901238	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61901245	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61901246	0.88[ASN][1000 genomes]
rs61901247	0.88[ASN][1000 genomes]
rs61901248	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61901252	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61902362	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7110734	0.89[ASN][1000 genomes]
rs7115146	0.92[ASN][1000 genomes]
rs7115407	0.94[ASN][1000 genomes]
rs7119710	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7125032	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7125400	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7935920	0.86[ASN][1000 genomes]
rs7941203	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7941525	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7949639	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7951239	0.88[ASN][1000 genomes]
rs7951290	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7951743	0.89[ASN][1000 genomes]
rs7952669	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73802200-73880800	Weak transcription	Esophagus	oesophagus
2	chr11:73804000-73880800	Weak transcription	Aorta	Aorta
3	chr11:73817600-73880800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:73825000-73880400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr11:73825800-73878600	Weak transcription	Fetal Brain Male	brain
6	chr11:73844800-73880200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr11:73847800-73875200	Weak transcription	Left Ventricle	heart
8	chr11:73847800-73880800	Weak transcription	Spleen	Spleen
9	chr11:73850200-73879600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr11:73850800-73875400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:73850800-73875600	Weak transcription	Brain Germinal Matrix	brain
12	chr11:73852000-73877000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:73852800-73877200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:73852800-73878000	Weak transcription	Psoas Muscle	Psoas
15	chr11:73853400-73875200	Weak transcription	Adipose Nuclei	Adipose
16	chr11:73853800-73875200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:73854000-73881000	Weak transcription	Lung	lung
18	chr11:73858600-73880200	Weak transcription	NHLF	lung
19	chr11:73858600-73880800	Weak transcription	Ovary	ovary
20	chr11:73858600-73881000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:73859000-73880000	Weak transcription	HepG2	liver
22	chr11:73860000-73880600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:73862200-73877400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:73864000-73875800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr11:73865200-73875800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr11:73865200-73879600	Strong transcription	Fetal Thymus	thymus
27	chr11:73866000-73880400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:73866200-73876200	Weak transcription	Osteobl	bone
29	chr11:73866200-73878600	Weak transcription	NHDF-Ad	bronchial
30	chr11:73866200-73880600	Weak transcription	Small Intestine	intestine
31	chr11:73866400-73876800	Weak transcription	NH-A	brain
32	chr11:73866600-73875800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:73866800-73875400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr11:73866800-73877400	Weak transcription	HMEC	breast
35	chr11:73867600-73877800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr11:73867800-73880800	Weak transcription	Gastric	stomach
37	chr11:73868000-73875800	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr11:73868000-73875800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:73868000-73875800	Weak transcription	Fetal Intestine Small	intestine
40	chr11:73868000-73875800	Weak transcription	Fetal Stomach	stomach
41	chr11:73868000-73881000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr11:73869200-73877600	Weak transcription	Hela-S3	cervix
43	chr11:73869400-73879800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:73869400-73879800	Strong transcription	Primary T cells from cord blood	blood
45	chr11:73869600-73881000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr11:73869800-73879400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr11:73870200-73875400	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr11:73870200-73875400	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr11:73870400-73875200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr11:73871000-73879600	Strong transcription	Primary T helper cells fromperipheralblood	blood

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