Variant report

Variant	rs7952669
Chromosome Location	chr11:73841728-73841729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10431176	0.84[ASN][1000 genomes]
rs10501415	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10898955	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10898957	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10898958	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10898959	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10898960	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10898961	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10898962	0.87[ASN][1000 genomes]
rs10898963	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11235988	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11235994	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11235995	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11235996	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11235997	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11235998	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11235999	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11236000	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11236002	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11236003	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11236005	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11236016	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11236018	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11236020	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11236026	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11236027	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11236029	0.88[ASN][1000 genomes]
rs11600314	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11601582	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11602451	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11603981	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11604125	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604713	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11606804	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11607335	0.84[ASN][1000 genomes]
rs11608147	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12222213	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12223320	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12574038	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12574039	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12574047	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12574556	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12574650	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12574824	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12574898	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12574960	0.83[ASN][1000 genomes]
rs12575211	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1405653	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1405654	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1474471	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1527302	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1615607	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17132701	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17132715	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1944971	0.82[ASN][1000 genomes]
rs2091436	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2178000	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35826958	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3814724	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4019299	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4537786	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4539349	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4565925	0.84[ASN][1000 genomes]
rs55823944	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56298621	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56366246	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57117016	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59109060	0.88[ASN][1000 genomes]
rs59605334	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60834556	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61901208	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61901211	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61901216	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61901217	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61901238	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61901245	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61901246	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61901247	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61901248	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61901252	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61902362	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6592547	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7110734	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7115146	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7115407	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7119710	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7125032	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7125400	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72341762	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7935920	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7941203	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7941525	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7951239	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951290	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7951743	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs826035	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs826044	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73781800-73849200	Weak transcription	Stomach Mucosa	stomach
2	chr11:73802200-73880800	Weak transcription	Esophagus	oesophagus
3	chr11:73804000-73880800	Weak transcription	Aorta	Aorta
4	chr11:73809800-73844400	Weak transcription	HMEC	breast
5	chr11:73809800-73847200	Weak transcription	HepG2	liver
6	chr11:73812000-73849000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:73814600-73845400	Weak transcription	Psoas Muscle	Psoas
8	chr11:73816800-73845400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:73817200-73846800	Weak transcription	Spleen	Spleen
10	chr11:73817400-73845400	Weak transcription	NHDF-Ad	bronchial
11	chr11:73817400-73846400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:73817600-73842000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:73817600-73842000	Weak transcription	Gastric	stomach
14	chr11:73817600-73845800	Weak transcription	NHEK	skin
15	chr11:73817600-73849200	Weak transcription	NHLF	lung
16	chr11:73817600-73880800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:73820400-73846400	Weak transcription	Osteobl	bone
18	chr11:73824400-73852400	Weak transcription	Colonic Mucosa	Colon
19	chr11:73824600-73846800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:73825000-73880400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr11:73825200-73843800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:73825400-73844200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr11:73825600-73842400	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr11:73825600-73843000	Weak transcription	Adipose Nuclei	Adipose
25	chr11:73825600-73843400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr11:73825600-73843600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr11:73825600-73845400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr11:73825600-73846600	Weak transcription	K562	blood
29	chr11:73825600-73847400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:73825800-73842200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr11:73825800-73843400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr11:73825800-73843400	Weak transcription	GM12878-XiMat	blood
33	chr11:73825800-73843600	Weak transcription	Brain Substantia Nigra	brain
34	chr11:73825800-73844400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr11:73825800-73878600	Weak transcription	Fetal Brain Male	brain
36	chr11:73826000-73842000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr11:73826000-73843400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:73826600-73843400	Weak transcription	Hela-S3	cervix
39	chr11:73827800-73842600	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr11:73828000-73843600	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr11:73829200-73843600	Weak transcription	Fetal Kidney	kidney
42	chr11:73829400-73842600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr11:73829400-73843200	Weak transcription	Left Ventricle	heart
44	chr11:73829400-73843600	Weak transcription	Duodenum Mucosa	Duodenum
45	chr11:73829400-73846600	Weak transcription	Brain Hippocampus Middle	brain
46	chr11:73829400-73849400	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr11:73829400-73873800	Weak transcription	Right Ventricle	heart
48	chr11:73829600-73843400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr11:73829600-73845800	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr11:73830200-73843800	Weak transcription	HUVEC	blood vessel

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