Variant report

Variant	rs4019299
Chromosome Location	chr11:73853748-73853749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10431176	0.89[CHB][hapmap];0.85[ASN][1000 genomes]
rs10501413	0.91[YRI][hapmap]
rs10501414	0.91[YRI][hapmap]
rs10501415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10898955	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10898957	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10898958	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10898959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10898961	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10898962	1.00[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs10898963	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10898964	0.80[ASN][1000 genomes]
rs10898966	0.89[CHB][hapmap];0.80[ASN][1000 genomes]
rs11235972	0.90[CHB][hapmap]
rs11235988	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11235994	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11235995	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11235996	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11235997	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11235998	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11235999	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11236000	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11236002	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11236003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11236005	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11236016	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11236018	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11236020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236026	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11236027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11236029	1.00[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs11600314	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11601582	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11602451	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11603981	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11604125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11604713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11606804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11607335	0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs11608147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12222213	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12223320	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12574038	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12574039	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12574047	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12574556	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12574650	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12574824	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12574898	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12574960	0.85[ASN][1000 genomes]
rs12575211	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1405653	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1405654	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1474471	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1527302	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1615607	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1685333	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs17132701	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17132715	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17132796	0.91[YRI][hapmap]
rs1800006	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs1800849	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1944971	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs2091436	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2178000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2302508	0.80[ASN][1000 genomes]
rs35826958	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3741133	0.89[CHB][hapmap]
rs3814724	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4537786	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4539349	1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4565925	0.86[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55823944	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56298621	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56366246	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57117016	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59109060	0.89[ASN][1000 genomes]
rs59605334	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60834556	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61901208	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61901211	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61901216	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61901217	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61901238	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61901245	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61901246	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61901247	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61901248	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61901252	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61902362	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6592547	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7110062	0.91[YRI][hapmap]
rs7110734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115146	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7115407	0.87[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7119710	0.87[CEU][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7125032	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7125400	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7129659	0.89[YRI][hapmap]
rs7129774	0.89[YRI][hapmap]
rs72341762	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7935920	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7941203	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7941525	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7949639	0.84[CHB][hapmap]
rs7951239	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7951290	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7951743	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952669	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs826035	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs826044	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs866650	0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73802200-73880800	Weak transcription	Esophagus	oesophagus
2	chr11:73804000-73880800	Weak transcription	Aorta	Aorta
3	chr11:73817600-73880800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:73825000-73880400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr11:73825800-73878600	Weak transcription	Fetal Brain Male	brain
6	chr11:73829400-73873800	Weak transcription	Right Ventricle	heart
7	chr11:73841800-73859800	Weak transcription	Small Intestine	intestine
8	chr11:73843400-73867200	Weak transcription	Fetal Stomach	stomach
9	chr11:73844800-73858200	Weak transcription	Ovary	ovary
10	chr11:73844800-73880200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr11:73847200-73869800	Weak transcription	Fetal Kidney	kidney
12	chr11:73847800-73866800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr11:73847800-73870800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr11:73847800-73875000	Weak transcription	Fetal Lung	lung
15	chr11:73847800-73875200	Weak transcription	Left Ventricle	heart
16	chr11:73847800-73880800	Weak transcription	Spleen	Spleen
17	chr11:73848000-73873000	Weak transcription	GM12878-XiMat	blood
18	chr11:73849600-73873800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:73849600-73875000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr11:73850200-73854400	Enhancers	NH-A	brain
21	chr11:73850200-73865600	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr11:73850200-73870800	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr11:73850200-73879600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr11:73850400-73854200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr11:73850400-73858200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr11:73850600-73864000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr11:73850600-73869800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr11:73850800-73854400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr11:73850800-73855600	Weak transcription	Primary B cells from cord blood	blood
30	chr11:73850800-73856400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr11:73850800-73856800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr11:73850800-73860600	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr11:73850800-73863400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:73850800-73864000	Weak transcription	Fetal Intestine Small	intestine
35	chr11:73850800-73865200	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr11:73850800-73865200	Weak transcription	Fetal Thymus	thymus
37	chr11:73850800-73865400	Weak transcription	Fetal Heart	heart
38	chr11:73850800-73866000	Weak transcription	Primary B cells from peripheral blood	blood
39	chr11:73850800-73866400	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr11:73850800-73866800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr11:73850800-73867200	Weak transcription	Thymus	Thymus
42	chr11:73850800-73867600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr11:73850800-73869000	Weak transcription	Primary hematopoietic stem cells	blood
44	chr11:73850800-73869800	Weak transcription	Dnd41	blood
45	chr11:73850800-73870000	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr11:73850800-73871000	Weak transcription	Liver	Liver
47	chr11:73850800-73872200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr11:73850800-73875400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr11:73850800-73875600	Weak transcription	Brain Germinal Matrix	brain
50	chr11:73851000-73853800	Weak transcription	NHLF	lung

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