Variant report

Variant	rs61901247
Chromosome Location	chr11:73845009-73845010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73689346..73691741-chr11:73844746..73846281,2	MCF-7	breast:

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10431176	0.84[ASN][1000 genomes]
rs10501415	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10898955	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10898957	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10898958	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10898959	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10898960	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10898961	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10898962	0.87[ASN][1000 genomes]
rs10898963	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11235988	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11235994	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11235995	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11235996	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11235997	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11235998	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11235999	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11236000	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11236002	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11236003	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11236005	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11236016	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11236018	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11236020	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11236026	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11236027	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11236029	0.88[ASN][1000 genomes]
rs11600314	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11601582	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11602451	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11603981	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11604125	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604713	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11606804	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11607335	0.84[ASN][1000 genomes]
rs11608147	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12222213	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12223320	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12574038	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12574039	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12574047	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12574556	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12574650	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12574824	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12574898	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12574960	0.83[ASN][1000 genomes]
rs12575211	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1405653	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1405654	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1474471	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1527302	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1615607	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17132701	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17132715	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1944971	0.82[ASN][1000 genomes]
rs2091436	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2178000	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35826958	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3814724	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4019299	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4537786	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4539349	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4565925	0.84[ASN][1000 genomes]
rs55823944	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56298621	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56366246	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57117016	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59109060	0.88[ASN][1000 genomes]
rs59605334	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60834556	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61901208	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61901211	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61901216	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61901217	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61901238	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61901245	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61901246	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61901248	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61901252	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61902362	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6592547	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7110734	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7115146	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7115407	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7119710	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7125032	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7125400	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72341762	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7935920	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7941203	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7941525	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7951239	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951290	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7951743	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7952669	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826035	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs826044	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73781800-73849200	Weak transcription	Stomach Mucosa	stomach
2	chr11:73802200-73880800	Weak transcription	Esophagus	oesophagus
3	chr11:73804000-73880800	Weak transcription	Aorta	Aorta
4	chr11:73809800-73847200	Weak transcription	HepG2	liver
5	chr11:73812000-73849000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:73814600-73845400	Weak transcription	Psoas Muscle	Psoas
7	chr11:73816800-73845400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:73817200-73846800	Weak transcription	Spleen	Spleen
9	chr11:73817400-73845400	Weak transcription	NHDF-Ad	bronchial
10	chr11:73817400-73846400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:73817600-73845800	Weak transcription	NHEK	skin
12	chr11:73817600-73849200	Weak transcription	NHLF	lung
13	chr11:73817600-73880800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:73820400-73846400	Weak transcription	Osteobl	bone
15	chr11:73824400-73852400	Weak transcription	Colonic Mucosa	Colon
16	chr11:73824600-73846800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:73825000-73880400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr11:73825600-73845400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:73825600-73846600	Weak transcription	K562	blood
20	chr11:73825600-73847400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:73825800-73878600	Weak transcription	Fetal Brain Male	brain
22	chr11:73829400-73846600	Weak transcription	Brain Hippocampus Middle	brain
23	chr11:73829400-73849400	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr11:73829400-73873800	Weak transcription	Right Ventricle	heart
25	chr11:73829600-73845800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr11:73831200-73846400	Weak transcription	NH-A	brain
27	chr11:73833200-73852800	Weak transcription	Pancreas	Pancrea
28	chr11:73833400-73847200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr11:73833400-73849600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr11:73833600-73849000	Weak transcription	Fetal Heart	heart
31	chr11:73833800-73849200	Weak transcription	Colon Smooth Muscle	Colon
32	chr11:73838000-73849400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr11:73840000-73850800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr11:73841000-73850800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr11:73841200-73847600	Strong transcription	Fetal Muscle Leg	muscle
36	chr11:73841200-73849600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr11:73841200-73850600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:73841200-73850800	Strong transcription	Primary B cells from peripheral blood	blood
39	chr11:73841200-73851000	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr11:73841400-73845200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr11:73841400-73845600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr11:73841400-73848400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr11:73841400-73850800	Strong transcription	Fetal Thymus	thymus
44	chr11:73841400-73850800	Strong transcription	Dnd41	blood
45	chr11:73841400-73851800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr11:73841600-73845400	Strong transcription	Primary hematopoietic stem cells	blood
47	chr11:73841600-73845600	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr11:73841600-73849000	Strong transcription	HSMM	muscle
49	chr11:73841600-73850800	Strong transcription	Primary B cells from cord blood	blood
50	chr11:73841800-73850800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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