Variant report

Variant	rs11585590
Chromosome Location	chr1:93232380-93232381
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:93225286..93227993-chr1:93232044..93233868,2	K562	blood:
2	chr1:93229641..93232894-chr1:93233646..93238232,4	K562	blood:
3	chr1:93230295..93232894-chr1:93233646..93235757,2	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs11164803	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164814	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11164816	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11577426	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11578004	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11578098	0.84[EUR][1000 genomes]
rs11581705	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11583778	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11588545	0.83[AMR][1000 genomes]
rs11589122	0.88[AMR][1000 genomes]
rs11589660	0.83[EUR][1000 genomes]
rs11591094	0.85[EUR][1000 genomes]
rs11800409	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11800771	0.84[EUR][1000 genomes]
rs11800848	0.84[EUR][1000 genomes]
rs11803097	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11805007	0.86[AMR][1000 genomes]
rs11805229	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11805698	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11807962	0.88[AMR][1000 genomes]
rs11808092	0.88[AMR][1000 genomes]
rs11809055	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11809700	0.82[EUR][1000 genomes]
rs11810217	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12731107	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12733238	0.85[AMR][1000 genomes]
rs12738833	0.84[EUR][1000 genomes]
rs12743005	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12746893	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12749480	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12749786	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12756698	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1333743	0.88[AMR][1000 genomes]
rs1415296	0.86[AMR][1000 genomes]
rs2051841	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34202284	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34221961	0.85[AMR][1000 genomes]
rs34231012	0.88[AMR][1000 genomes]
rs34250288	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34288890	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34305407	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34343030	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34734076	0.88[AMR][1000 genomes]
rs34761380	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34812295	0.86[AMR][1000 genomes]
rs34843292	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35038369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35241270	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35311203	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35435370	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35526187	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35612297	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35699160	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35705463	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35901796	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36099538	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs36114576	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3790450	0.88[AMR][1000 genomes]
rs4642892	0.85[AMR][1000 genomes]
rs56044027	0.86[AMR][1000 genomes]
rs59864761	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67026262	0.85[EUR][1000 genomes]
rs67646822	0.85[EUR][1000 genomes]
rs67876779	0.85[EUR][1000 genomes]
rs68160001	0.83[EUR][1000 genomes]
rs71652503	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724555	0.85[EUR][1000 genomes]
rs72724574	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72724586	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724587	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv871263	chr1:93196273-93248228	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93211800-93249200	Weak transcription	Fetal Stomach	stomach
2	chr1:93214000-93240000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:93214000-93248400	Weak transcription	Lung	lung
4	chr1:93220400-93232800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr1:93221400-93233800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:93222000-93248000	Weak transcription	HSMMtube	muscle
7	chr1:93222400-93233800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:93222400-93234000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr1:93222400-93240600	Weak transcription	Left Ventricle	heart
10	chr1:93222400-93248200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:93222400-93248200	Weak transcription	Fetal Intestine Large	intestine
12	chr1:93222400-93248400	Weak transcription	Placenta	Placenta
13	chr1:93222600-93232600	Weak transcription	Gastric	stomach
14	chr1:93222600-93246800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:93222800-93233800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:93224800-93234000	Weak transcription	Fetal Intestine Small	intestine
17	chr1:93224800-93234000	Weak transcription	Psoas Muscle	Psoas
18	chr1:93225600-93248000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr1:93226000-93249200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:93227800-93233800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr1:93228000-93240600	Weak transcription	Pancreas	Pancrea
22	chr1:93228200-93233800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr1:93230200-93233800	Weak transcription	NHEK	skin
24	chr1:93231600-93234000	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr1:93231600-93236600	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr1:93231600-93248000	Weak transcription	Adipose Nuclei	Adipose

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