Variant report

Variant	rs35699160
Chromosome Location	chr1:93217952-93217953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:93214862..93218519-chr1:93302722..93305780,4	K562	blood:
2	chr1:93215740..93218576-chr1:93300666..93305068,4	K562	blood:
3	chr1:93217706..93221127-chr1:93297522..93299381,3	K562	blood:
4	chr1:93213628..93216369-chr1:93216676..93218192,2	K562	blood:
5	chr1:93215411..93218590-chr1:93221864..93223911,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251795	Chromatin interaction
ENSG00000206680	Chromatin interaction
ENSG00000234202	Chromatin interaction
ENSG00000122406	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11164803	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11164814	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11164816	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11577426	0.86[EUR][1000 genomes]
rs11578004	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11578098	0.82[EUR][1000 genomes]
rs11581705	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11583778	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11585590	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11589122	0.83[AMR][1000 genomes]
rs11589660	0.81[EUR][1000 genomes]
rs11591094	0.83[EUR][1000 genomes]
rs11800409	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11800771	0.82[EUR][1000 genomes]
rs11800848	0.82[EUR][1000 genomes]
rs11803097	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11805007	0.82[AMR][1000 genomes]
rs11805229	0.85[EUR][1000 genomes]
rs11805698	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11807962	0.83[AMR][1000 genomes]
rs11808092	0.83[AMR][1000 genomes]
rs11809055	0.84[EUR][1000 genomes]
rs11810217	0.85[EUR][1000 genomes]
rs12731107	0.86[EUR][1000 genomes]
rs12738833	0.82[EUR][1000 genomes]
rs12743005	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12746893	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12749480	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12749786	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12756698	0.86[EUR][1000 genomes]
rs1333743	0.83[AMR][1000 genomes]
rs1415296	0.82[AMR][1000 genomes]
rs2051841	0.85[EUR][1000 genomes]
rs34202284	0.86[EUR][1000 genomes]
rs34221961	0.80[AMR][1000 genomes]
rs34231012	0.83[AMR][1000 genomes]
rs34250288	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34288890	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34305407	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34734076	0.83[AMR][1000 genomes]
rs34761380	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34812295	0.82[AMR][1000 genomes]
rs34843292	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35038369	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35241270	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35311203	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35435370	0.85[EUR][1000 genomes]
rs35526187	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35612297	0.85[EUR][1000 genomes]
rs35705463	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35901796	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36114576	0.83[EUR][1000 genomes]
rs3790450	0.83[AMR][1000 genomes]
rs56044027	0.82[AMR][1000 genomes]
rs59864761	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67026262	0.83[EUR][1000 genomes]
rs67646822	0.83[EUR][1000 genomes]
rs67876779	0.83[EUR][1000 genomes]
rs68160001	0.81[EUR][1000 genomes]
rs71652503	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72724555	0.82[EUR][1000 genomes]
rs72724574	0.85[EUR][1000 genomes]
rs72724586	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72724587	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802611	chr1:93090476-93219907	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv997898	chr1:93167128-93228156	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv871263	chr1:93196273-93248228	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93190000-93221800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr1:93190200-93220000	Weak transcription	Fetal Muscle Leg	muscle
3	chr1:93191200-93221600	Weak transcription	Fetal Intestine Large	intestine
4	chr1:93192400-93221200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr1:93192400-93226400	Weak transcription	Esophagus	oesophagus
6	chr1:93193000-93223800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr1:93194600-93218000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:93195000-93218000	Weak transcription	NHEK	skin
9	chr1:93200200-93224000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr1:93201000-93218200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:93201000-93218200	Weak transcription	NH-A	brain
12	chr1:93201000-93220000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:93209200-93222400	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr1:93209200-93227800	Weak transcription	Primary B cells from cord blood	blood
15	chr1:93210000-93218200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:93210000-93221200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:93211800-93218400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr1:93211800-93218600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr1:93211800-93249200	Weak transcription	Fetal Stomach	stomach
20	chr1:93212400-93220000	Weak transcription	Fetal Intestine Small	intestine
21	chr1:93213600-93218000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr1:93213800-93218000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:93213800-93218000	Weak transcription	Osteobl	bone
24	chr1:93213800-93218200	Weak transcription	Brain Anterior Caudate	brain
25	chr1:93213800-93218200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr1:93213800-93218200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr1:93213800-93221200	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr1:93213800-93221200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr1:93213800-93221200	Weak transcription	Gastric	stomach
30	chr1:93214000-93218000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr1:93214000-93218200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr1:93214000-93218200	Weak transcription	Brain Hippocampus Middle	brain
33	chr1:93214000-93218400	Weak transcription	K562	blood
34	chr1:93214000-93221200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr1:93214000-93221200	Weak transcription	Placenta	Placenta
36	chr1:93214000-93224200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr1:93214000-93224600	Weak transcription	Psoas Muscle	Psoas
38	chr1:93214000-93231200	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr1:93214000-93240000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr1:93214000-93248400	Weak transcription	Lung	lung
41	chr1:93214200-93218000	Weak transcription	NHLF	lung
42	chr1:93214200-93221200	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr1:93217600-93219800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr1:93217800-93219000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links