Variant report

Variant	rs67026262
Chromosome Location	chr1:93111627-93111628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93110037..93112267-chr1:93116205..93118057,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs11164803	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11164814	0.81[EUR][1000 genomes]
rs11164816	0.81[EUR][1000 genomes]
rs11577426	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11578004	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11578098	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11581705	0.81[EUR][1000 genomes]
rs11585590	0.85[EUR][1000 genomes]
rs11588509	0.85[ASN][1000 genomes]
rs11588545	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11589122	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11589660	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11591094	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11800409	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11800771	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11800848	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11803097	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11804321	0.85[ASN][1000 genomes]
rs11805007	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11805229	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11805698	0.88[EUR][1000 genomes]
rs11807962	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11808092	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11809055	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11809700	0.86[EUR][1000 genomes]
rs11810217	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12730641	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12731107	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12733238	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12738833	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12743005	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12743520	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12746893	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12749480	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12749786	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12756698	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12756786	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1333743	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1415296	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2051841	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34202284	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34221961	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34231012	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34250288	0.84[EUR][1000 genomes]
rs34305407	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34343030	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34734076	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34761380	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34812295	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34843292	0.84[EUR][1000 genomes]
rs35038369	0.85[EUR][1000 genomes]
rs35241270	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35311203	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35435370	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35526187	0.89[EUR][1000 genomes]
rs35612297	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35699160	0.83[EUR][1000 genomes]
rs35705463	0.85[EUR][1000 genomes]
rs35901796	0.84[EUR][1000 genomes]
rs36099538	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs36114576	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790450	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4642892	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56044027	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56307974	0.85[ASN][1000 genomes]
rs56406332	0.85[ASN][1000 genomes]
rs59864761	0.81[EUR][1000 genomes]
rs67646822	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67876779	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68160001	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71650502	0.86[ASN][1000 genomes]
rs71652503	0.89[EUR][1000 genomes]
rs72722498	0.85[ASN][1000 genomes]
rs72724515	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72724555	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724574	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72724586	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72724587	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830603	chr1:93003657-93172206	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1794348	chr1:93090476-93192932	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1802611	chr1:93090476-93219907	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93052000-93119400	Weak transcription	NHEK	skin
2	chr1:93053600-93166200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:93062000-93118800	Weak transcription	HMEC	breast
4	chr1:93065200-93118600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr1:93065800-93119600	Weak transcription	NH-A	brain
6	chr1:93066800-93114600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:93068600-93112600	Weak transcription	Brain Substantia Nigra	brain
8	chr1:93069600-93119600	Weak transcription	Colon Smooth Muscle	Colon
9	chr1:93089800-93114200	Weak transcription	HSMM	muscle
10	chr1:93098400-93205400	Weak transcription	NHLF	lung
11	chr1:93100600-93118600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:93101200-93114600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr1:93101200-93118600	Weak transcription	Aorta	Aorta
14	chr1:93101200-93118800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr1:93101400-93118200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr1:93101400-93118200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr1:93101400-93118200	Weak transcription	Left Ventricle	heart
18	chr1:93101400-93118400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:93101400-93118400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr1:93101400-93118400	Weak transcription	Fetal Intestine Small	intestine
21	chr1:93101400-93118400	Weak transcription	Fetal Stomach	stomach
22	chr1:93101400-93118600	Weak transcription	Lung	lung
23	chr1:93101400-93118600	Weak transcription	Right Ventricle	heart
24	chr1:93101400-93118800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr1:93101400-93119000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr1:93101400-93119000	Weak transcription	Gastric	stomach
27	chr1:93101600-93118400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr1:93101600-93118600	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr1:93101600-93120200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr1:93101600-93163600	Weak transcription	Colonic Mucosa	Colon
31	chr1:93101800-93118200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr1:93101800-93118600	Weak transcription	HSMMtube	muscle
33	chr1:93101800-93119200	Weak transcription	Rectal Smooth Muscle	rectum
34	chr1:93101800-93119600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr1:93102000-93112400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr1:93102000-93114400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr1:93102000-93115200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr1:93102000-93117600	Weak transcription	Fetal Intestine Large	intestine
39	chr1:93102000-93118200	Weak transcription	Fetal Muscle Leg	muscle
40	chr1:93102000-93118400	Weak transcription	Primary B cells from cord blood	blood
41	chr1:93102000-93118600	Weak transcription	Adipose Nuclei	Adipose
42	chr1:93102000-93118800	Weak transcription	Primary B cells from peripheral blood	blood
43	chr1:93102000-93118800	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr1:93102000-93119000	Weak transcription	Placenta	Placenta
45	chr1:93102000-93119200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr1:93102000-93119800	Weak transcription	Brain Angular Gyrus	brain
47	chr1:93102000-93157600	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr1:93102200-93112800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr1:93102200-93112800	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr1:93102200-93117800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links