Variant report

Variant	rs35901796
Chromosome Location	chr1:93253963-93253964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:93250918..93254010-chr1:93306747..93309482,3	K562	blood:
2	chr1:93251113..93254538-chr1:93261545..93264232,3	K562	blood:
3	chr1:93249024..93254901-chr1:93255339..93260264,13	K562	blood:
4	chr1:93253683..93256527-chr1:93296123..93298986,2	MCF-7	breast:
5	chr1:93249360..93255989-chr1:93295958..93302033,8	K562	blood:

Variant related genes	Relation type
ENSG00000122406	Chromatin interaction
ENSG00000067208	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs11164803	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11164814	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164816	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164820	1.00[ASN][1000 genomes]
rs11577426	0.87[EUR][1000 genomes]
rs11578004	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11578098	0.83[EUR][1000 genomes]
rs11581705	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11583778	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11585590	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11589122	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11589660	0.83[EUR][1000 genomes]
rs11591094	0.84[EUR][1000 genomes]
rs11800409	0.87[EUR][1000 genomes]
rs11800771	0.83[EUR][1000 genomes]
rs11800848	0.83[EUR][1000 genomes]
rs11803097	0.87[EUR][1000 genomes]
rs11805007	0.81[AMR][1000 genomes]
rs11805229	0.86[EUR][1000 genomes]
rs11805698	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11807962	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11808092	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11809055	0.86[EUR][1000 genomes]
rs11809700	0.81[EUR][1000 genomes]
rs11810111	1.00[ASN][1000 genomes]
rs11810217	0.86[EUR][1000 genomes]
rs12731107	0.87[EUR][1000 genomes]
rs12738833	0.83[EUR][1000 genomes]
rs12738964	1.00[ASN][1000 genomes]
rs12743005	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12746893	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12749480	0.87[EUR][1000 genomes]
rs12749786	0.87[EUR][1000 genomes]
rs12756698	0.87[EUR][1000 genomes]
rs1333743	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1415296	0.81[AMR][1000 genomes]
rs17614449	1.00[ASN][1000 genomes]
rs2051841	0.86[EUR][1000 genomes]
rs34202284	0.87[EUR][1000 genomes]
rs34231012	0.82[AMR][1000 genomes]
rs34250288	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34288890	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34305407	0.87[EUR][1000 genomes]
rs34734076	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34761380	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34812295	0.81[AMR][1000 genomes]
rs34843292	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35038369	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35241270	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35311203	0.87[EUR][1000 genomes]
rs35435370	0.86[EUR][1000 genomes]
rs35526187	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35612297	0.86[EUR][1000 genomes]
rs35699160	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35705463	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36114576	0.84[EUR][1000 genomes]
rs3790450	0.82[AMR][1000 genomes]
rs56044027	0.81[AMR][1000 genomes]
rs59864761	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66649041	1.00[ASN][1000 genomes]
rs67026262	0.84[EUR][1000 genomes]
rs67646822	0.84[EUR][1000 genomes]
rs67876779	0.84[EUR][1000 genomes]
rs68160001	0.83[EUR][1000 genomes]
rs71652503	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71652507	1.00[ASN][1000 genomes]
rs72724555	0.84[EUR][1000 genomes]
rs72724574	0.86[EUR][1000 genomes]
rs72724586	0.87[EUR][1000 genomes]
rs72724587	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv947289	chr1:93251307-93276080	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93250200-93256800	Weak transcription	Fetal Heart	heart
2	chr1:93251200-93257200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:93251200-93257400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:93251200-93257400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:93251400-93255200	Weak transcription	Spleen	Spleen
6	chr1:93251400-93255400	Weak transcription	HepG2	liver
7	chr1:93251600-93256800	Weak transcription	Right Atrium	heart
8	chr1:93252200-93254400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:93252200-93257400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr1:93252400-93257400	Weak transcription	HUVEC	blood vessel
11	chr1:93252800-93256400	Weak transcription	K562	blood
12	chr1:93253200-93257200	Weak transcription	Stomach Mucosa	stomach

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