Variant report

Variant	rs35311203
Chromosome Location	chr1:93178467-93178468
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93175257..93178526-chr1:93178760..93181629,3	K562	blood:
2	chr1:93164366..93166063-chr1:93176534..93179501,2	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11164803	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164814	0.83[EUR][1000 genomes]
rs11164816	0.83[EUR][1000 genomes]
rs11577426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11578004	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11578098	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11581705	0.83[EUR][1000 genomes]
rs11583778	0.81[EUR][1000 genomes]
rs11585590	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11588545	0.83[EUR][1000 genomes]
rs11589122	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11589660	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11591094	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11800409	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11800771	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11800848	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11803097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11805007	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11805229	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11805698	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11807962	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11808092	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11809055	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11809700	0.94[EUR][1000 genomes]
rs11810217	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12731107	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12733238	0.83[EUR][1000 genomes]
rs12738833	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12743005	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12743520	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12746893	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12749480	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12749786	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12756698	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12756786	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1333743	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1415296	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2051841	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34202284	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34221961	0.83[EUR][1000 genomes]
rs34231012	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34250288	0.86[EUR][1000 genomes]
rs34288890	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34305407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34343030	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34734076	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34761380	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34812295	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34843292	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35038369	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35241270	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35435370	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35526187	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35612297	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35699160	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35705463	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35901796	0.87[EUR][1000 genomes]
rs36099538	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36114576	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3790450	0.83[EUR][1000 genomes]
rs4642892	0.82[EUR][1000 genomes]
rs56044027	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59864761	0.83[EUR][1000 genomes]
rs67026262	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67646822	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67876779	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs68160001	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71652503	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724515	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72724555	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72724574	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72724586	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724587	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794348	chr1:93090476-93192932	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1802611	chr1:93090476-93219907	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv997898	chr1:93167128-93228156	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35311203	FAM69A	cis	Artery Tibial	GTEx

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93098400-93205400	Weak transcription	NHLF	lung
2	chr1:93123600-93178800	Weak transcription	Aorta	Aorta
3	chr1:93123600-93213400	Weak transcription	Gastric	stomach
4	chr1:93155800-93213400	Weak transcription	Lung	lung
5	chr1:93161000-93197400	Weak transcription	Primary B cells from cord blood	blood
6	chr1:93161000-93197800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:93161000-93199000	Weak transcription	Left Ventricle	heart
8	chr1:93163800-93190000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:93170200-93189800	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr1:93174400-93202000	Weak transcription	Fetal Heart	heart
11	chr1:93175600-93179400	Weak transcription	A549	lung
12	chr1:93175600-93180000	Weak transcription	Stomach Mucosa	stomach
13	chr1:93175800-93190200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr1:93175800-93199400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:93176000-93183200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:93177800-93179200	Weak transcription	Fetal Intestine Large	intestine
17	chr1:93177800-93197600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr1:93178000-93179000	Weak transcription	HepG2	liver
19	chr1:93178400-93178800	Active TSS	Liver	Liver
20	chr1:93178400-93181200	Weak transcription	Fetal Intestine Small	intestine

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