Variant report

Variant	rs11593585
Chromosome Location	chr10:45071193-45071194
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10450470	0.90[AMR][1000 genomes]
rs11239190	0.83[AMR][1000 genomes]
rs11592569	0.95[ASN][1000 genomes]
rs11593121	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11595335	0.97[ASN][1000 genomes]
rs11596551	0.81[ASN][1000 genomes]
rs11597734	0.98[ASN][1000 genomes]
rs11598774	0.93[ASN][1000 genomes]
rs11598916	0.98[ASN][1000 genomes]
rs12265349	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1480609	0.83[AMR][1000 genomes]
rs1572202	0.83[ASN][1000 genomes]
rs17156636	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17156689	0.95[AMR][1000 genomes]
rs17156718	0.92[AMR][1000 genomes]
rs17156720	0.92[AMR][1000 genomes]
rs17156721	0.92[AMR][1000 genomes]
rs17407291	0.97[ASN][1000 genomes]
rs17408225	0.99[ASN][1000 genomes]
rs17485977	0.98[ASN][1000 genomes]
rs17486117	0.98[ASN][1000 genomes]
rs17487074	1.00[ASN][1000 genomes]
rs1904838	0.90[AMR][1000 genomes]
rs1977896	0.81[ASN][1000 genomes]
rs1977897	0.81[ASN][1000 genomes]
rs2046089	0.86[AMR][1000 genomes]
rs2046090	0.83[AMR][1000 genomes]
rs2127752	0.81[AMR][1000 genomes]
rs34071927	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57033308	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57991475	1.00[ASN][1000 genomes]
rs60639694	0.90[AMR][1000 genomes]
rs72778803	0.95[AMR][1000 genomes]
rs72778804	0.90[AMR][1000 genomes]
rs72778811	0.93[AMR][1000 genomes]
rs72795018	0.83[ASN][1000 genomes]
rs72795043	0.81[ASN][1000 genomes]
rs72795057	0.93[ASN][1000 genomes]
rs72795059	0.93[ASN][1000 genomes]
rs72795073	0.97[ASN][1000 genomes]
rs72795078	0.98[ASN][1000 genomes]
rs72795079	0.94[ASN][1000 genomes]
rs72796944	0.89[AMR][1000 genomes]
rs72796950	0.90[AMR][1000 genomes]
rs72796951	0.90[AMR][1000 genomes]
rs72796952	0.90[AMR][1000 genomes]
rs7898623	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7905651	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45065800-45072400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr10:45066200-45072000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:45066800-45071600	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:45067200-45072000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:45067600-45071800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr10:45067600-45071800	Weak transcription	NHDF-Ad	bronchial
7	chr10:45068000-45071600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:45069400-45074000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr10:45070200-45071600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:45070400-45073600	Enhancers	Fetal Muscle Trunk	muscle
11	chr10:45070600-45071600	Active TSS	Spleen	Spleen

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