Variant report

Variant	rs57991475
Chromosome Location	chr10:45078652-45078653
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45078069..45079682-chr10:45102104..45104464,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1002588	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10450453	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10450471	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11239171	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11592569	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11593138	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11593585	1.00[ASN][1000 genomes]
rs11595335	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11595799	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11596551	0.81[ASN][1000 genomes]
rs11597734	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11598774	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11598916	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12254926	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12258288	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1572202	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1585912	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17156606	0.81[EUR][1000 genomes]
rs17156636	0.99[ASN][1000 genomes]
rs17407291	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17408225	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17485517	0.82[EUR][1000 genomes]
rs17485977	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17486117	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17487074	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1977896	0.81[ASN][1000 genomes]
rs1977897	0.81[ASN][1000 genomes]
rs34071927	0.99[ASN][1000 genomes]
rs4306259	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7068018	0.83[EUR][1000 genomes]
rs7075674	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7084757	0.82[EUR][1000 genomes]
rs72795018	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72795035	0.82[EUR][1000 genomes]
rs72795043	0.81[ASN][1000 genomes]
rs72795057	0.93[ASN][1000 genomes]
rs72795059	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72795073	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72795075	0.81[EUR][1000 genomes]
rs72795078	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72795079	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7898402	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7898623	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1042549	chr10:45071890-45117466	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45072200-45081600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:45078000-45078800	Weak transcription	NHDF-Ad	bronchial
3	chr10:45078000-45082200	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:45078000-45082400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:45078000-45082600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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