Variant report

Variant	rs11593138
Chromosome Location	chr10:45128152-45128153
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1002588	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10450453	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10450470	1.00[ASN][1000 genomes]
rs10450471	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239171	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11239190	0.98[ASN][1000 genomes]
rs11591669	0.80[EUR][1000 genomes]
rs11592569	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11593121	1.00[ASN][1000 genomes]
rs11593439	0.80[EUR][1000 genomes]
rs11593591	0.80[EUR][1000 genomes]
rs11595335	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11595472	0.80[EUR][1000 genomes]
rs11595799	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11596551	0.80[EUR][1000 genomes]
rs11598774	0.85[AMR][1000 genomes]
rs12254926	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258288	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480609	1.00[ASN][1000 genomes]
rs1585912	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17156606	0.85[EUR][1000 genomes]
rs17156689	1.00[ASN][1000 genomes]
rs17156718	1.00[ASN][1000 genomes]
rs17156720	1.00[ASN][1000 genomes]
rs17156721	1.00[ASN][1000 genomes]
rs17407080	0.80[EUR][1000 genomes]
rs17407137	0.80[EUR][1000 genomes]
rs17408225	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17487074	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1904838	1.00[ASN][1000 genomes]
rs1977896	0.80[EUR][1000 genomes]
rs1977897	0.80[EUR][1000 genomes]
rs2046089	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2046090	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2127752	0.98[ASN][1000 genomes]
rs2184771	0.80[EUR][1000 genomes]
rs28373082	0.80[EUR][1000 genomes]
rs4306259	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57033308	1.00[ASN][1000 genomes]
rs57991475	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60639694	1.00[ASN][1000 genomes]
rs6593427	0.80[EUR][1000 genomes]
rs7068018	0.89[EUR][1000 genomes]
rs7075674	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72778803	1.00[ASN][1000 genomes]
rs72778804	1.00[ASN][1000 genomes]
rs72778811	1.00[ASN][1000 genomes]
rs72795026	0.80[EUR][1000 genomes]
rs72795036	0.80[EUR][1000 genomes]
rs72795038	0.80[EUR][1000 genomes]
rs72795039	0.80[EUR][1000 genomes]
rs72795043	0.80[EUR][1000 genomes]
rs72795075	0.85[EUR][1000 genomes]
rs72795079	0.83[EUR][1000 genomes]
rs72796944	0.91[ASN][1000 genomes]
rs72796950	1.00[ASN][1000 genomes]
rs72796951	1.00[ASN][1000 genomes]
rs72796952	1.00[ASN][1000 genomes]
rs7898402	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7898623	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45125800-45130400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr10:45125800-45130400	Weak transcription	NHDF-Ad	bronchial

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