Variant report

Variant	rs1002588
Chromosome Location	chr10:45126974-45126975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10450453	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10450471	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11239171	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11239190	0.93[AFR][1000 genomes]
rs11592569	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11593138	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11595335	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11595799	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11598774	0.82[AMR][1000 genomes]
rs12254926	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12258288	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12265349	0.91[CEU][hapmap]
rs1480609	0.93[AFR][1000 genomes]
rs1585912	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17156606	0.86[EUR][1000 genomes]
rs17408225	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17487074	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2127752	0.92[AFR][1000 genomes]
rs4306259	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57991475	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7068018	0.89[EUR][1000 genomes]
rs7075674	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72795075	0.86[EUR][1000 genomes]
rs72795079	0.81[EUR][1000 genomes]
rs7898402	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7898623	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7905651	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45125800-45130400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr10:45125800-45130400	Weak transcription	NHDF-Ad	bronchial

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