Variant report

Variant	rs17408225
Chromosome Location	chr10:45069591-45069592
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1002588	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10450453	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10450471	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11239171	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11591669	0.80[ASN][1000 genomes]
rs11592569	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11593138	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11593437	0.80[ASN][1000 genomes]
rs11593439	0.80[ASN][1000 genomes]
rs11593585	0.99[ASN][1000 genomes]
rs11593591	0.80[ASN][1000 genomes]
rs11595335	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11595472	0.80[ASN][1000 genomes]
rs11595799	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11596551	0.82[ASN][1000 genomes]
rs11597734	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11598774	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11598916	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12254926	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12258288	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12265349	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1572202	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1585912	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17156606	0.85[EUR][1000 genomes]
rs17156636	1.00[ASN][1000 genomes]
rs17407080	0.80[ASN][1000 genomes]
rs17407137	0.80[ASN][1000 genomes]
rs17407291	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17485517	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17485977	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17486117	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17487074	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1977896	0.82[ASN][1000 genomes]
rs1977897	0.82[ASN][1000 genomes]
rs2184771	0.80[ASN][1000 genomes]
rs28373082	0.80[ASN][1000 genomes]
rs34071927	1.00[ASN][1000 genomes]
rs4306259	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57991475	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7068018	0.89[EUR][1000 genomes]
rs7075674	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7084757	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72795018	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72795026	0.80[ASN][1000 genomes]
rs72795029	0.80[ASN][1000 genomes]
rs72795030	0.80[ASN][1000 genomes]
rs72795035	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72795036	0.80[ASN][1000 genomes]
rs72795038	0.80[ASN][1000 genomes]
rs72795039	0.80[ASN][1000 genomes]
rs72795043	0.82[ASN][1000 genomes]
rs72795057	0.94[ASN][1000 genomes]
rs72795059	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72795073	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72795075	0.85[EUR][1000 genomes]
rs72795078	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72795079	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7898402	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7898623	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7905651	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45044600-45070200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:45065800-45070400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:45065800-45072400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:45066200-45072000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:45066800-45071600	Weak transcription	Fetal Muscle Leg	muscle
6	chr10:45067200-45072000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:45067600-45071800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:45067600-45071800	Weak transcription	NHDF-Ad	bronchial
9	chr10:45068000-45071600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:45069400-45070600	Weak transcription	Spleen	Spleen
11	chr10:45069400-45074000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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