Variant report

Variant	rs72795079
Chromosome Location	chr10:45059001-45059002
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45053214..45055772-chr10:45057655..45059779,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1002588	0.81[EUR][1000 genomes]
rs10450453	0.80[EUR][1000 genomes]
rs10450471	0.83[EUR][1000 genomes]
rs11239171	0.83[EUR][1000 genomes]
rs11591669	0.81[EUR][1000 genomes]
rs11592569	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11593138	0.83[EUR][1000 genomes]
rs11593439	0.81[EUR][1000 genomes]
rs11593585	0.94[ASN][1000 genomes]
rs11593591	0.81[EUR][1000 genomes]
rs11595335	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11595472	0.81[EUR][1000 genomes]
rs11595799	0.83[EUR][1000 genomes]
rs11596551	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11597734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11598774	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11598916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12254926	0.83[EUR][1000 genomes]
rs12258288	0.83[EUR][1000 genomes]
rs1572202	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1585912	0.83[EUR][1000 genomes]
rs17156606	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17156636	0.95[ASN][1000 genomes]
rs17407080	0.81[EUR][1000 genomes]
rs17407137	0.81[EUR][1000 genomes]
rs17407291	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17408225	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17485517	0.87[EUR][1000 genomes]
rs17485977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17486117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17487074	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1977896	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1977897	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2184771	0.81[EUR][1000 genomes]
rs28373082	0.81[EUR][1000 genomes]
rs34071927	0.95[ASN][1000 genomes]
rs4306259	0.81[EUR][1000 genomes]
rs57991475	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6593427	0.81[EUR][1000 genomes]
rs7068018	0.89[EUR][1000 genomes]
rs7075674	0.83[EUR][1000 genomes]
rs7084757	0.87[EUR][1000 genomes]
rs72795018	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72795026	0.81[EUR][1000 genomes]
rs72795035	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72795036	0.81[EUR][1000 genomes]
rs72795038	0.81[EUR][1000 genomes]
rs72795039	0.81[EUR][1000 genomes]
rs72795043	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72795057	0.92[ASN][1000 genomes]
rs72795059	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72795073	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72795075	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72795078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7898402	0.83[EUR][1000 genomes]
rs7898623	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45044600-45070200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:45058200-45060200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:45059000-45059400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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