Variant report

Variant	rs72795075
Chromosome Location	chr10:45054523-45054524
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45053214..45055772-chr10:45057655..45059779,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1002588	0.86[EUR][1000 genomes]
rs10450453	0.82[EUR][1000 genomes]
rs10450471	0.85[EUR][1000 genomes]
rs11239130	0.83[AMR][1000 genomes]
rs11239171	0.85[EUR][1000 genomes]
rs11591669	0.90[EUR][1000 genomes]
rs11593138	0.85[EUR][1000 genomes]
rs11593439	0.90[EUR][1000 genomes]
rs11593591	0.90[EUR][1000 genomes]
rs11595335	0.81[EUR][1000 genomes]
rs11595472	0.90[EUR][1000 genomes]
rs11595799	0.85[EUR][1000 genomes]
rs11596551	0.90[EUR][1000 genomes]
rs11597734	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11598916	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12254926	0.85[EUR][1000 genomes]
rs12258288	0.85[EUR][1000 genomes]
rs1572202	0.83[EUR][1000 genomes]
rs1585912	0.85[EUR][1000 genomes]
rs17156606	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17407080	0.90[EUR][1000 genomes]
rs17407137	0.90[EUR][1000 genomes]
rs17407291	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17408225	0.85[EUR][1000 genomes]
rs17485517	0.83[EUR][1000 genomes]
rs17485977	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17486117	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17487074	0.81[EUR][1000 genomes]
rs1977896	0.90[EUR][1000 genomes]
rs1977897	0.90[EUR][1000 genomes]
rs2184771	0.90[EUR][1000 genomes]
rs28373082	0.90[EUR][1000 genomes]
rs4306259	0.83[EUR][1000 genomes]
rs57991475	0.81[EUR][1000 genomes]
rs6593427	0.90[EUR][1000 genomes]
rs7068018	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075674	0.85[EUR][1000 genomes]
rs7084757	0.83[EUR][1000 genomes]
rs72795018	0.83[EUR][1000 genomes]
rs72795026	0.90[EUR][1000 genomes]
rs72795029	0.89[EUR][1000 genomes]
rs72795035	0.83[EUR][1000 genomes]
rs72795036	0.90[EUR][1000 genomes]
rs72795038	0.90[EUR][1000 genomes]
rs72795039	0.90[EUR][1000 genomes]
rs72795042	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72795043	0.90[EUR][1000 genomes]
rs72795059	0.84[EUR][1000 genomes]
rs72795073	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72795078	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72795079	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7898402	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45044600-45070200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:45053600-45054600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:45053600-45054800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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