Variant report

Variant	rs11597734
Chromosome Location	chr10:45053522-45053523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45053214..45055772-chr10:45057655..45059779,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11591669	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11592569	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11593437	0.81[ASN][1000 genomes]
rs11593439	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11593585	0.98[ASN][1000 genomes]
rs11593591	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11595335	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11595472	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11596551	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11598774	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11598916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12265349	0.91[CHB][hapmap]
rs1572202	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17156606	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17156636	0.99[ASN][1000 genomes]
rs17407080	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17407137	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17407291	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17408225	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17485517	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17485977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17486117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17487074	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1977896	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1977897	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2184771	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28373082	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34071927	0.99[ASN][1000 genomes]
rs57991475	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6593427	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7068018	0.85[EUR][1000 genomes]
rs7084757	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72795018	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72795026	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72795029	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72795030	0.81[ASN][1000 genomes]
rs72795035	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72795036	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72795038	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72795039	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72795042	0.84[EUR][1000 genomes]
rs72795043	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72795057	0.95[ASN][1000 genomes]
rs72795059	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72795073	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72795075	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72795078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72795079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7898623	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7905651	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45044600-45070200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:45052800-45053600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:45053200-45054000	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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