Variant report

Variant	rs34071927
Chromosome Location	chr10:45061301-45061302
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10450470	0.88[AMR][1000 genomes]
rs11239190	0.81[AMR][1000 genomes]
rs11591669	0.80[ASN][1000 genomes]
rs11592569	0.94[ASN][1000 genomes]
rs11593121	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11593437	0.80[ASN][1000 genomes]
rs11593439	0.80[ASN][1000 genomes]
rs11593585	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11593591	0.80[ASN][1000 genomes]
rs11595335	0.95[ASN][1000 genomes]
rs11595472	0.80[ASN][1000 genomes]
rs11596551	0.82[ASN][1000 genomes]
rs11597734	0.99[ASN][1000 genomes]
rs11598774	0.92[ASN][1000 genomes]
rs11598916	0.99[ASN][1000 genomes]
rs1480609	0.81[AMR][1000 genomes]
rs1572202	0.84[ASN][1000 genomes]
rs17156636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17156689	0.93[AMR][1000 genomes]
rs17156718	0.90[AMR][1000 genomes]
rs17156720	0.90[AMR][1000 genomes]
rs17156721	0.90[AMR][1000 genomes]
rs17407080	0.80[ASN][1000 genomes]
rs17407137	0.80[ASN][1000 genomes]
rs17407291	0.98[ASN][1000 genomes]
rs17408225	1.00[ASN][1000 genomes]
rs17485517	0.80[ASN][1000 genomes]
rs17485977	0.99[ASN][1000 genomes]
rs17486117	0.99[ASN][1000 genomes]
rs17487074	0.99[ASN][1000 genomes]
rs1904838	0.88[AMR][1000 genomes]
rs1977896	0.82[ASN][1000 genomes]
rs1977897	0.82[ASN][1000 genomes]
rs2046089	0.84[AMR][1000 genomes]
rs2046090	0.81[AMR][1000 genomes]
rs2184771	0.80[ASN][1000 genomes]
rs28373082	0.80[ASN][1000 genomes]
rs57033308	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57991475	0.99[ASN][1000 genomes]
rs60639694	0.88[AMR][1000 genomes]
rs7084757	0.80[ASN][1000 genomes]
rs72778803	0.93[AMR][1000 genomes]
rs72778804	0.88[AMR][1000 genomes]
rs72778811	0.92[AMR][1000 genomes]
rs72795018	0.84[ASN][1000 genomes]
rs72795026	0.80[ASN][1000 genomes]
rs72795029	0.80[ASN][1000 genomes]
rs72795030	0.80[ASN][1000 genomes]
rs72795035	0.80[ASN][1000 genomes]
rs72795036	0.80[ASN][1000 genomes]
rs72795038	0.80[ASN][1000 genomes]
rs72795039	0.80[ASN][1000 genomes]
rs72795043	0.82[ASN][1000 genomes]
rs72795057	0.94[ASN][1000 genomes]
rs72795059	0.94[ASN][1000 genomes]
rs72795073	0.98[ASN][1000 genomes]
rs72795078	0.99[ASN][1000 genomes]
rs72795079	0.95[ASN][1000 genomes]
rs72796944	0.87[AMR][1000 genomes]
rs72796950	0.88[AMR][1000 genomes]
rs72796951	0.88[AMR][1000 genomes]
rs72796952	0.88[AMR][1000 genomes]
rs7898623	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv12780	chr10:45060172-45062337	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45044600-45070200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:45059400-45062400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:45060600-45064800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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