Variant report

Variant	rs11598774
Chromosome Location	chr10:45072541-45072542
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1002588	0.82[AMR][1000 genomes]
rs10450453	0.82[AMR][1000 genomes]
rs10450471	0.85[AMR][1000 genomes]
rs11239171	0.87[AMR][1000 genomes]
rs11592569	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11593138	0.85[AMR][1000 genomes]
rs11593585	0.93[ASN][1000 genomes]
rs11595335	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11595799	0.83[AMR][1000 genomes]
rs11597734	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11598916	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12254926	0.85[AMR][1000 genomes]
rs12258288	0.84[AMR][1000 genomes]
rs12265349	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1585912	0.87[AMR][1000 genomes]
rs17156636	0.92[ASN][1000 genomes]
rs17407291	0.90[ASN][1000 genomes]
rs17408225	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17485977	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17486117	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17487074	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34071927	0.92[ASN][1000 genomes]
rs4306259	0.85[AMR][1000 genomes]
rs57991475	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7075674	0.88[AMR][1000 genomes]
rs72795057	0.86[ASN][1000 genomes]
rs72795059	0.86[ASN][1000 genomes]
rs72795073	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72795078	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72795079	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7898402	0.83[AMR][1000 genomes]
rs7898623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7905651	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1042549	chr10:45071890-45117466	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45069400-45074000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr10:45070400-45073600	Enhancers	Fetal Muscle Trunk	muscle
3	chr10:45071600-45072600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:45071600-45072800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:45071600-45072800	Enhancers	Fetal Muscle Leg	muscle
6	chr10:45071600-45073800	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr10:45071800-45072800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:45071800-45072800	Enhancers	NHDF-Ad	bronchial
9	chr10:45071800-45074000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr10:45072000-45072800	Enhancers	Ovary	ovary
11	chr10:45072000-45073000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:45072000-45073800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:45072200-45072800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr10:45072200-45081600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:45072400-45072800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr10:45072400-45073600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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