Variant report

Variant	rs10450453
Chromosome Location	chr10:45122931-45122932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45122681..45123624-chr10:45136685..45137479,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1002588	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10450470	0.95[ASN][1000 genomes]
rs10450471	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11239171	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11239190	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11592569	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11593121	0.95[ASN][1000 genomes]
rs11593138	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11595335	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11595799	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11598774	0.82[AMR][1000 genomes]
rs12254926	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12258288	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1480609	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1585912	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17156606	0.82[EUR][1000 genomes]
rs17156689	0.95[ASN][1000 genomes]
rs17156718	0.95[ASN][1000 genomes]
rs17156720	0.95[ASN][1000 genomes]
rs17156721	0.95[ASN][1000 genomes]
rs17408225	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17487074	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1904838	0.95[ASN][1000 genomes]
rs2046089	0.95[ASN][1000 genomes]
rs2046090	0.93[ASN][1000 genomes]
rs2127752	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4306259	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57033308	0.95[ASN][1000 genomes]
rs57991475	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60639694	0.95[ASN][1000 genomes]
rs7068018	0.86[EUR][1000 genomes]
rs7075674	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72778803	0.95[ASN][1000 genomes]
rs72778804	0.95[ASN][1000 genomes]
rs72778811	0.95[ASN][1000 genomes]
rs72795075	0.82[EUR][1000 genomes]
rs72795079	0.80[EUR][1000 genomes]
rs72796944	0.87[ASN][1000 genomes]
rs72796950	0.95[ASN][1000 genomes]
rs72796951	0.95[ASN][1000 genomes]
rs72796952	0.95[ASN][1000 genomes]
rs7898402	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7898623	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45115200-45126800	Weak transcription	Aorta	Aorta
2	chr10:45115800-45123000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:45120400-45124200	Weak transcription	HSMMtube	muscle
4	chr10:45120800-45123000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:45120800-45123600	Weak transcription	HSMM	muscle
6	chr10:45121600-45124000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr10:45121800-45124200	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr10:45122800-45124400	Weak transcription	Brain Hippocampus Middle	brain
9	chr10:45122800-45125800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:45122800-45125800	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links