Variant report

Variant	rs11594419
Chromosome Location	chr10:61284411-61284412
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11819278	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1360913	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1360914	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1572395	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1696796	0.90[EUR][1000 genomes]
rs1696802	0.88[EUR][1000 genomes]
rs1763886	0.89[EUR][1000 genomes]
rs1763887	0.88[EUR][1000 genomes]
rs1763891	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1763894	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2484858	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2484859	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2650255	0.90[EUR][1000 genomes]
rs2784798	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34321740	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895564	chr10:61220923-61327502	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61282000-61285000	Enhancers	Colon Smooth Muscle	Colon
2	chr10:61283600-61285000	Enhancers	Fetal Lung	lung
3	chr10:61284000-61285200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:61284000-61285400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr10:61284200-61285000	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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