Variant report

Variant	rs11819278
Chromosome Location	chr10:61294523-61294524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11594419	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1360913	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1360914	0.90[EUR][1000 genomes]
rs1572395	0.89[EUR][1000 genomes]
rs1696796	0.90[EUR][1000 genomes]
rs1696802	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1763886	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1763887	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1763891	0.90[EUR][1000 genomes]
rs1763894	0.90[EUR][1000 genomes]
rs2484858	0.89[EUR][1000 genomes]
rs2484859	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2650255	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2784798	0.90[EUR][1000 genomes]
rs34321740	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895564	chr10:61220923-61327502	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv551150	chr10:61286904-61330297	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61286000-61296400	Weak transcription	Ovary	ovary
2	chr10:61293800-61296400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:61294200-61295800	Enhancers	Colon Smooth Muscle	Colon
4	chr10:61294400-61294600	Enhancers	Lung	lung
5	chr10:61294400-61294600	Enhancers	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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