Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11594419	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11819278	0.90[EUR][1000 genomes]
rs1360913	0.86[EUR][1000 genomes]
rs1360914	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1572394	0.91[ASN][1000 genomes]
rs1572395	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1630404	0.87[ASN][1000 genomes]
rs1696795	0.90[ASN][1000 genomes]
rs1696796	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1696802	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1763886	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1763887	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1763888	0.91[ASN][1000 genomes]
rs1763893	0.91[ASN][1000 genomes]
rs1763894	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2484858	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2484859	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2650255	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2650256	0.82[ASN][1000 genomes]
rs2650257	0.88[ASN][1000 genomes]
rs2784798	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34321740	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895564	chr10:61220923-61327502	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1763891	C9orf131	trans	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61282000-61285000	Enhancers	Colon Smooth Muscle	Colon
2	chr10:61283400-61284400	Enhancers	Fetal Stomach	stomach
3	chr10:61283600-61285000	Enhancers	Fetal Lung	lung
4	chr10:61283800-61284400	Enhancers	Brain Cingulate Gyrus	brain
5	chr10:61284000-61285200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:61284000-61285400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr10:61284200-61285000	Enhancers	Ovary	ovary

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