Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1360914	0.82[ASN][1000 genomes]
rs1572394	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1572395	0.82[ASN][1000 genomes]
rs1619518	0.87[AFR][1000 genomes]
rs1630404	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1696795	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1696796	0.82[ASN][1000 genomes]
rs1696802	0.85[ASN][1000 genomes]
rs1763886	0.84[ASN][1000 genomes]
rs1763887	0.85[ASN][1000 genomes]
rs1763888	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1763891	0.82[ASN][1000 genomes]
rs1763893	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1763894	0.82[ASN][1000 genomes]
rs1853258	0.88[AFR][1000 genomes]
rs2454767	0.83[AFR][1000 genomes]
rs2484858	0.82[ASN][1000 genomes]
rs2484859	0.82[ASN][1000 genomes]
rs2650255	0.84[ASN][1000 genomes]
rs2650257	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2784798	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895564	chr10:61220923-61327502	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv551150	chr10:61286904-61330297	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61286000-61296400	Weak transcription	Ovary	ovary

Quick Search: