Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1360914	0.87[ASN][1000 genomes]
rs1572394	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1572395	0.87[ASN][1000 genomes]
rs1619518	0.88[AFR][1000 genomes]
rs1696795	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1696796	0.86[ASN][1000 genomes]
rs1696802	0.85[ASN][1000 genomes]
rs1763886	0.83[ASN][1000 genomes]
rs1763887	0.85[ASN][1000 genomes]
rs1763888	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1763891	0.87[ASN][1000 genomes]
rs1763893	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1763894	0.87[ASN][1000 genomes]
rs1853258	0.90[AFR][1000 genomes]
rs2454767	0.84[AFR][1000 genomes]
rs2484858	0.87[ASN][1000 genomes]
rs2484859	0.87[ASN][1000 genomes]
rs2650255	0.83[ASN][1000 genomes]
rs2650256	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2650257	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2784798	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895564	chr10:61220923-61327502	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61278200-61283400	Weak transcription	Fetal Stomach	stomach
2	chr10:61278200-61283600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:61278400-61283600	Weak transcription	Fetal Lung	lung
4	chr10:61278600-61282000	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:61278600-61283800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:61278600-61284200	Weak transcription	Ovary	ovary
7	chr10:61280400-61280800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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