Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11594419	0.88[EUR][1000 genomes]
rs11819278	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1360913	0.84[EUR][1000 genomes]
rs1360914	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1572394	0.88[ASN][1000 genomes]
rs1572395	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1630404	0.85[ASN][1000 genomes]
rs1696795	0.87[ASN][1000 genomes]
rs1696796	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1763886	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1763887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1763888	0.88[ASN][1000 genomes]
rs1763891	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1763893	0.88[ASN][1000 genomes]
rs1763894	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2484858	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2484859	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2650255	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2650256	0.85[ASN][1000 genomes]
rs2650257	0.91[ASN][1000 genomes]
rs2784798	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34321740	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895564	chr10:61220923-61327502	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv551150	chr10:61286904-61330297	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1696802	C9orf131	trans	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61294600-61298400	Weak transcription	Lung	lung
2	chr10:61295400-61298800	Enhancers	Fetal Stomach	stomach
3	chr10:61295600-61299600	Enhancers	Fetal Lung	lung
4	chr10:61295800-61298200	Enhancers	Duodenum Smooth Muscle	Duodenum
5	chr10:61296200-61298000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr10:61296200-61298200	Enhancers	Fetal Brain Male	brain
7	chr10:61296400-61298200	Enhancers	Fetal Brain Female	brain
8	chr10:61296400-61299000	Enhancers	Ovary	ovary
9	chr10:61296400-61299200	Enhancers	Fetal Muscle Leg	muscle
10	chr10:61296400-61299200	Enhancers	Stomach Smooth Muscle	stomach
11	chr10:61296600-61298200	Enhancers	NHDF-Ad	bronchial
12	chr10:61296800-61298800	Weak transcription	Aorta	Aorta
13	chr10:61297200-61298000	Enhancers	Rectal Smooth Muscle	rectum
14	chr10:61297400-61298000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:61297400-61298600	Enhancers	Colon Smooth Muscle	Colon
16	chr10:61297800-61298000	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr10:61297800-61298800	Enhancers	Fetal Muscle Trunk	muscle

Quick Search: