Variant report

Variant	rs1360913
Chromosome Location	chr10:61280467-61280468
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11594419	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11819278	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1360914	0.86[EUR][1000 genomes]
rs1572395	0.85[EUR][1000 genomes]
rs1696796	0.86[EUR][1000 genomes]
rs1696802	0.84[EUR][1000 genomes]
rs1763886	0.85[EUR][1000 genomes]
rs1763887	0.84[EUR][1000 genomes]
rs1763891	0.86[EUR][1000 genomes]
rs1763894	0.86[EUR][1000 genomes]
rs2484858	0.85[EUR][1000 genomes]
rs2484859	0.86[EUR][1000 genomes]
rs2650255	0.86[EUR][1000 genomes]
rs2784798	0.86[EUR][1000 genomes]
rs34321740	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895564	chr10:61220923-61327502	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1360913	FOLR3	trans	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61278200-61283400	Weak transcription	Fetal Stomach	stomach
2	chr10:61278200-61283600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:61278400-61283600	Weak transcription	Fetal Lung	lung
4	chr10:61278600-61282000	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:61278600-61283800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:61278600-61284200	Weak transcription	Ovary	ovary
7	chr10:61280400-61280600	Enhancers	Brain Germinal Matrix	brain
8	chr10:61280400-61280800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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