Variant report

Variant	rs1763886
Chromosome Location	chr10:61296617-61296618
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11594419	0.89[EUR][1000 genomes]
rs11819278	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1360913	0.85[EUR][1000 genomes]
rs1360914	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1572394	0.87[ASN][1000 genomes]
rs1572395	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1630404	0.83[ASN][1000 genomes]
rs1696795	0.86[ASN][1000 genomes]
rs1696796	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1696802	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1763887	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1763888	0.87[ASN][1000 genomes]
rs1763891	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1763893	0.87[ASN][1000 genomes]
rs1763894	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2484858	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2484859	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2650255	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2650256	0.84[ASN][1000 genomes]
rs2650257	0.90[ASN][1000 genomes]
rs2784798	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34321740	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895564	chr10:61220923-61327502	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv551150	chr10:61286904-61330297	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61294600-61298400	Weak transcription	Lung	lung
2	chr10:61295400-61296800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:61295400-61298800	Enhancers	Fetal Stomach	stomach
4	chr10:61295600-61296800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:61295600-61297200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:61295600-61297600	Enhancers	HUVEC	blood vessel
7	chr10:61295600-61299600	Enhancers	Fetal Lung	lung
8	chr10:61295800-61296800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:61295800-61297000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:61295800-61297000	Enhancers	NH-A	brain
11	chr10:61295800-61297200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:61295800-61297200	Enhancers	HSMM	muscle
13	chr10:61295800-61298200	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr10:61296200-61296800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:61296200-61296800	Flanking Active TSS	HSMMtube	muscle
16	chr10:61296200-61296800	Enhancers	Osteobl	bone
17	chr10:61296200-61297000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:61296200-61297200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr10:61296200-61297200	Enhancers	Brain Anterior Caudate	brain
20	chr10:61296200-61297400	Enhancers	Adipose Nuclei	Adipose
21	chr10:61296200-61297400	Enhancers	Brain Hippocampus Middle	brain
22	chr10:61296200-61297400	Enhancers	Fetal Kidney	kidney
23	chr10:61296200-61298000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr10:61296200-61298200	Enhancers	Fetal Brain Male	brain
25	chr10:61296400-61296800	Enhancers	H1 Cell Line	embryonic stem cell
26	chr10:61296400-61296800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:61296400-61296800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:61296400-61296800	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr10:61296400-61296800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr10:61296400-61296800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr10:61296400-61296800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr10:61296400-61296800	Enhancers	Aorta	Aorta
33	chr10:61296400-61296800	Enhancers	Brain Substantia Nigra	brain
34	chr10:61296400-61296800	Enhancers	Fetal Muscle Trunk	muscle
35	chr10:61296400-61296800	Enhancers	Right Ventricle	heart
36	chr10:61296400-61296800	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr10:61296400-61297000	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr10:61296400-61297000	Enhancers	Fetal Intestine Small	intestine
39	chr10:61296400-61297000	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr10:61296400-61297200	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr10:61296400-61297200	Enhancers	Brain Cingulate Gyrus	brain
42	chr10:61296400-61297200	Enhancers	Duodenum Mucosa	Duodenum
43	chr10:61296400-61297200	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr10:61296400-61297200	Enhancers	HepG2	liver
45	chr10:61296400-61297600	Enhancers	NHLF	lung
46	chr10:61296400-61298200	Enhancers	Fetal Brain Female	brain
47	chr10:61296400-61299000	Enhancers	Ovary	ovary
48	chr10:61296400-61299200	Enhancers	Fetal Muscle Leg	muscle
49	chr10:61296400-61299200	Enhancers	Stomach Smooth Muscle	stomach
50	chr10:61296600-61296800	Enhancers	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links