Variant report

Variant	rs1572394
Chromosome Location	chr10:61282822-61282823
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1360914	0.90[ASN][1000 genomes]
rs1572395	0.91[ASN][1000 genomes]
rs1630404	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1696795	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1696796	0.88[ASN][1000 genomes]
rs1696802	0.88[ASN][1000 genomes]
rs1763886	0.87[ASN][1000 genomes]
rs1763887	0.88[ASN][1000 genomes]
rs1763888	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1763891	0.91[ASN][1000 genomes]
rs1763893	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1763894	0.90[ASN][1000 genomes]
rs2484858	0.91[ASN][1000 genomes]
rs2484859	0.90[ASN][1000 genomes]
rs2650255	0.87[ASN][1000 genomes]
rs2650256	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2650257	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2784798	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895564	chr10:61220923-61327502	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61278200-61283400	Weak transcription	Fetal Stomach	stomach
2	chr10:61278200-61283600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:61278400-61283600	Weak transcription	Fetal Lung	lung
4	chr10:61278600-61283800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:61278600-61284200	Weak transcription	Ovary	ovary
6	chr10:61282000-61285000	Enhancers	Colon Smooth Muscle	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links