Variant report

Variant	rs11599485
Chromosome Location	chr10:117255042-117255043
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10787574	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10787577	1.00[CEU][hapmap]
rs10885726	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10885727	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10885736	1.00[CEU][hapmap]
rs10885745	1.00[CEU][hapmap]
rs11197267	1.00[CEU][hapmap]
rs11197281	1.00[CEU][hapmap]
rs11197283	1.00[CEU][hapmap]
rs11197292	1.00[CEU][hapmap]
rs11197297	1.00[CEU][hapmap]
rs12252303	1.00[CEU][hapmap]
rs12360040	1.00[CEU][hapmap]
rs1328011	1.00[CEU][hapmap]
rs1336105	1.00[CEU][hapmap]
rs1336107	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1336111	1.00[CEU][hapmap]
rs1336114	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1336115	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1336118	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1414633	1.00[CEU][hapmap]
rs1414635	1.00[CEU][hapmap]
rs1414639	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs1414640	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1572396	0.96[CEU][hapmap]
rs1572397	1.00[CEU][hapmap]
rs1572398	0.96[CEU][hapmap]
rs1572399	0.92[CEU][hapmap]
rs1572400	0.96[CEU][hapmap]
rs1572402	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1572403	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1932581	0.92[CEU][hapmap]
rs1932582	1.00[CEU][hapmap]
rs2065824	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2065827	1.00[CEU][hapmap]
rs2209850	1.00[CEU][hapmap]
rs2225799	1.00[CEU][hapmap]
rs2245045	1.00[CEU][hapmap]
rs2246089	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2769374	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2769379	1.00[CEU][hapmap]
rs2769383	1.00[CEU][hapmap]
rs2769407	1.00[CEU][hapmap]
rs2769417	0.83[CEU][hapmap]
rs2769422	0.83[CEU][hapmap]
rs2784801	1.00[CEU][hapmap]
rs2784803	1.00[CEU][hapmap]
rs2784810	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2804145	0.96[CEU][hapmap]
rs2804176	0.87[CEU][hapmap]
rs2804194	1.00[CEU][hapmap]
rs2804235	1.00[CEU][hapmap]
rs2804246	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2804250	0.83[CEU][hapmap]
rs4306223	1.00[CEU][hapmap]
rs4400711	0.85[YRI][hapmap]
rs6585335	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6585337	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7073293	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7075401	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7078828	1.00[CEU][hapmap]
rs7085497	1.00[CEU][hapmap]
rs7086325	1.00[CEU][hapmap]
rs7088622	0.96[CEU][hapmap];0.97[AFR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7093703	0.88[AFR][1000 genomes]
rs7098660	1.00[CEU][hapmap]
rs72641352	0.81[EUR][1000 genomes]
rs7895853	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7899493	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7906146	1.00[CEU][hapmap]
rs7911480	0.83[YRI][hapmap]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117251400-117257200	Weak transcription	Aorta	Aorta
2	chr10:117251600-117255400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:117251600-117258800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links