Variant report

Variant	rs2804176
Chromosome Location	chr10:117310336-117310337
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10787577	0.87[CEU][hapmap];0.95[CHB][hapmap];0.96[CHD][hapmap];0.98[GIH][hapmap];0.91[LWK][hapmap];0.95[TSI][hapmap]
rs10885726	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10885727	0.84[EUR][1000 genomes]
rs10885736	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs10885745	0.87[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.93[YRI][hapmap];0.80[EUR][1000 genomes]
rs11197267	0.87[CEU][hapmap];0.95[CHB][hapmap]
rs11197281	0.87[CEU][hapmap];0.95[CHB][hapmap]
rs11197283	0.87[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.88[YRI][hapmap]
rs11197292	0.86[CEU][hapmap]
rs11197297	0.86[CEU][hapmap]
rs11599485	0.87[CEU][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12252303	0.87[CEU][hapmap];0.95[CHB][hapmap];0.96[CHD][hapmap];0.98[GIH][hapmap];0.92[TSI][hapmap]
rs12360040	0.87[CEU][hapmap];0.95[CHB][hapmap]
rs1328011	0.87[CEU][hapmap];0.95[CHB][hapmap]
rs1336105	0.87[CEU][hapmap];0.85[CHB][hapmap]
rs1336106	0.85[CHB][hapmap]
rs1336107	0.91[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.80[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1336111	0.87[CEU][hapmap];0.95[CHB][hapmap];0.88[YRI][hapmap]
rs1336114	0.87[CEU][hapmap];0.95[CHB][hapmap];0.93[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1336115	0.87[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1336118	0.87[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1414633	0.87[CEU][hapmap];0.95[CHB][hapmap]
rs1414635	0.87[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.83[LWK][hapmap];0.94[TSI][hapmap];0.88[YRI][hapmap]
rs1414639	0.84[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1414640	0.87[CEU][hapmap];0.95[CHB][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1572396	0.84[CEU][hapmap]
rs1572397	0.87[CEU][hapmap];0.95[CHB][hapmap]
rs1572398	0.84[CEU][hapmap];0.81[TSI][hapmap]
rs1572399	0.83[CEU][hapmap]
rs1572400	0.84[CEU][hapmap];0.83[TSI][hapmap]
rs1572402	0.87[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1572403	0.90[CEU][hapmap];0.94[CHB][hapmap];0.87[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1590732	0.86[YRI][hapmap]
rs1932581	0.84[CEU][hapmap]
rs1932582	0.87[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.84[JPT][hapmap];0.95[TSI][hapmap];0.81[YRI][hapmap]
rs2065824	0.87[CEU][hapmap];0.90[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2065827	0.87[CEU][hapmap];0.85[CHB][hapmap];0.82[YRI][hapmap]
rs2209850	0.87[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.84[LWK][hapmap];0.88[YRI][hapmap]
rs2225799	0.87[CEU][hapmap];0.80[CHB][hapmap];0.84[JPT][hapmap]
rs2245045	0.87[CEU][hapmap];0.95[CHB][hapmap];0.93[YRI][hapmap]
rs2246089	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2769374	0.90[CEU][hapmap];0.80[YRI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2769379	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap]
rs2769383	0.87[CEU][hapmap];0.95[CHB][hapmap];0.81[YRI][hapmap]
rs2769407	0.87[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.80[EUR][1000 genomes]
rs2769417	0.84[GIH][hapmap];0.84[LWK][hapmap];0.87[TSI][hapmap]
rs2769422	0.82[CEU][hapmap];0.84[GIH][hapmap];1.00[LWK][hapmap];0.84[TSI][hapmap];0.86[YRI][hapmap]
rs2784801	0.91[CEU][hapmap];0.94[CHB][hapmap]
rs2784803	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap]
rs2784810	0.87[CEU][hapmap];0.95[CHB][hapmap];0.88[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2804145	0.83[CEU][hapmap];0.94[CHB][hapmap]
rs2804194	0.86[CEU][hapmap];0.94[CHB][hapmap];0.80[EUR][1000 genomes]
rs2804199	0.80[EUR][1000 genomes]
rs2804210	0.80[EUR][1000 genomes]
rs2804235	0.87[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.84[LWK][hapmap];0.92[TSI][hapmap];0.81[YRI][hapmap]
rs2804246	0.87[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2804250	0.82[GIH][hapmap];1.00[LWK][hapmap];0.87[TSI][hapmap];0.86[YRI][hapmap]
rs4306223	0.87[CEU][hapmap];0.90[CHB][hapmap]
rs6585335	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6585337	0.87[CEU][hapmap];0.85[CHB][hapmap];0.88[YRI][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7073293	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7075401	0.87[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7078828	0.87[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs7085497	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap]
rs7086325	0.87[CEU][hapmap]
rs7088622	0.83[CEU][hapmap];0.90[EUR][1000 genomes]
rs7098660	0.87[CEU][hapmap];0.95[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];0.92[TSI][hapmap]
rs72641352	0.81[EUR][1000 genomes]
rs7895853	0.87[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];0.92[TSI][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7899493	0.87[CEU][hapmap];0.84[JPT][hapmap]
rs7906146	0.87[CEU][hapmap];0.82[GIH][hapmap];0.84[JPT][hapmap];0.92[TSI][hapmap]

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links