Variant report

Variant	rs1336107
Chromosome Location	chr10:117318155-117318156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10787577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10885726	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10885727	0.84[EUR][1000 genomes]
rs10885736	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs10885745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs11197267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs11197292	1.00[CEU][hapmap]
rs11197297	1.00[CEU][hapmap]
rs11599485	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12252303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12360040	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1328011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1336105	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1336106	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1336111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs1336114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1336115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1336118	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1414633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1414635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs1414639	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1414640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1572396	0.95[CEU][hapmap]
rs1572397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1572398	0.95[CEU][hapmap]
rs1572399	0.96[CEU][hapmap];0.81[CHB][hapmap]
rs1572400	0.95[CEU][hapmap]
rs1572402	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1572403	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1932581	0.96[CEU][hapmap]
rs1932582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2065824	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2065827	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs2209850	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs2225799	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap]
rs2245045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2246089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2769374	1.00[CEU][hapmap];0.88[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs2769383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs2769407	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2769417	0.82[CEU][hapmap];0.80[YRI][hapmap]
rs2769422	0.82[CEU][hapmap]
rs2784801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs2784803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2784810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2804145	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2804176	0.91[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.80[YRI][hapmap]
rs2804194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2804199	0.81[EUR][1000 genomes]
rs2804210	0.81[EUR][1000 genomes]
rs2804235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs2804246	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2804250	0.82[CEU][hapmap]
rs4306223	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6585335	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6585337	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7073293	0.94[EUR][1000 genomes]
rs7075401	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7077305	0.81[JPT][hapmap]
rs7078828	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs7085497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs7086325	1.00[CEU][hapmap]
rs7088622	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs7098660	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72641352	0.82[EUR][1000 genomes]
rs7895853	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7899493	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap]
rs7906146	1.00[CEU][hapmap];0.80[CHB][hapmap];0.88[JPT][hapmap]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117317800-117318200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr10:117317800-117318400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr10:117317800-117318400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr10:117318000-117318400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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