Variant report

Variant	rs7895853
Chromosome Location	chr10:117282016-117282017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10787574	0.88[ASN][1000 genomes]
rs10787577	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap]
rs10885726	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10885727	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10885736	1.00[CEU][hapmap]
rs10885745	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs11197267	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11197281	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11197283	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11197292	1.00[CEU][hapmap]
rs11197297	1.00[CEU][hapmap]
rs11599485	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12252303	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap]
rs12360040	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1328011	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1336105	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1336106	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1336107	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1336111	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1336114	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1336115	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1336118	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1414633	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1414635	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]
rs1414639	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs1414640	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1572396	0.96[CEU][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap]
rs1572397	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1572398	0.96[CEU][hapmap];0.88[MEX][hapmap];0.88[TSI][hapmap]
rs1572399	0.96[CEU][hapmap]
rs1572400	0.96[CEU][hapmap];0.85[TSI][hapmap]
rs1572402	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1572403	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17724227	0.81[MKK][hapmap]
rs1932581	0.96[CEU][hapmap]
rs1932582	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap]
rs2065824	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2065827	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2209850	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap]
rs2225799	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap]
rs2245045	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2246089	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2769374	1.00[CEU][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2769379	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2769383	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2769407	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.80[EUR][1000 genomes]
rs2769417	0.83[CEU][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap]
rs2769422	0.83[CEU][hapmap];0.87[TSI][hapmap]
rs2784801	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2784803	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2784810	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2804145	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2804176	0.87[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];0.92[TSI][hapmap]
rs2804194	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs2804199	0.80[EUR][1000 genomes]
rs2804210	0.80[EUR][1000 genomes]
rs2804235	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap]
rs2804246	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2804250	0.83[CEU][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap]
rs4306223	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6585335	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6585337	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073293	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7075401	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7078828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap]
rs7085497	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7086325	1.00[CEU][hapmap]
rs7088622	0.96[CEU][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7098660	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs72641352	0.81[EUR][1000 genomes]
rs7899493	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs7906146	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];1.00[TSI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7895853	EMX2	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117281000-117282400	Weak transcription	Fetal Brain Female	brain
2	chr10:117281800-117282800	ZNF genes & repeats	Aorta	Aorta
3	chr10:117281800-117283600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet

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