Variant report

Variant	rs1572396
Chromosome Location	chr10:117325021-117325022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10787577	0.96[CEU][hapmap];0.81[TSI][hapmap]
rs10885726	0.84[EUR][1000 genomes]
rs10885727	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10885736	1.00[CEU][hapmap]
rs10885745	0.96[CEU][hapmap]
rs11197267	0.96[CEU][hapmap]
rs11197281	0.96[CEU][hapmap];0.96[YRI][hapmap]
rs11197283	0.96[CEU][hapmap]
rs11197292	0.95[CEU][hapmap];0.87[YRI][hapmap]
rs11197297	0.95[CEU][hapmap]
rs11599485	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs12252303	0.96[CEU][hapmap]
rs12360040	0.96[CEU][hapmap];0.88[YRI][hapmap]
rs1328011	0.96[CEU][hapmap]
rs1336105	0.96[CEU][hapmap]
rs1336107	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs1336111	0.96[CEU][hapmap]
rs1336114	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs1336115	0.96[CEU][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes]
rs1336116	0.87[AFR][1000 genomes]
rs1336118	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs1414633	0.96[CEU][hapmap]
rs1414635	0.96[CEU][hapmap];0.80[TSI][hapmap]
rs1414639	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1414640	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1572397	0.96[CEU][hapmap]
rs1572398	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.92[YRI][hapmap]
rs1572399	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[YRI][hapmap]
rs1572400	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap]
rs1572401	0.84[AFR][1000 genomes]
rs1572402	0.96[CEU][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1572403	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs17724227	0.81[ASW][hapmap]
rs1932581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1932582	0.96[CEU][hapmap];0.81[TSI][hapmap]
rs2065824	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2065827	0.96[CEU][hapmap]
rs2149112	0.88[YRI][hapmap];0.82[AFR][1000 genomes]
rs2209850	0.96[CEU][hapmap]
rs2225799	0.96[CEU][hapmap]
rs2245045	0.96[CEU][hapmap]
rs2246089	0.88[EUR][1000 genomes]
rs2769374	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs2769379	0.96[CEU][hapmap]
rs2769383	0.96[CEU][hapmap]
rs2769407	0.96[CEU][hapmap];0.81[TSI][hapmap]
rs2784801	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs2784803	0.95[CEU][hapmap]
rs2784810	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs2804145	0.91[CEU][hapmap]
rs2804176	0.84[CEU][hapmap]
rs2804194	0.95[CEU][hapmap]
rs2804235	0.96[CEU][hapmap]
rs2804246	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs28414370	0.82[AFR][1000 genomes]
rs4306223	0.96[CEU][hapmap]
rs6585335	0.84[EUR][1000 genomes]
rs6585337	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs7073293	0.84[EUR][1000 genomes]
rs7075401	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs7078828	0.96[CEU][hapmap];0.81[TSI][hapmap]
rs7085497	0.96[CEU][hapmap]
rs7086325	0.96[CEU][hapmap]
rs7088622	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs7098660	0.96[CEU][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap]
rs7895853	0.96[CEU][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.85[EUR][1000 genomes]
rs7899493	0.96[CEU][hapmap]
rs7906146	0.96[CEU][hapmap];0.84[TSI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1572396	EMX2	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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