Variant report

Variant	rs11605608
Chromosome Location	chr11:86559325-86559326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10501629	1.00[ASN][1000 genomes]
rs11234769	1.00[ASN][1000 genomes]
rs11234776	1.00[ASN][1000 genomes]
rs11234777	1.00[ASN][1000 genomes]
rs11234778	1.00[ASN][1000 genomes]
rs11234785	1.00[ASN][1000 genomes]
rs11234798	1.00[ASN][1000 genomes]
rs11234799	1.00[ASN][1000 genomes]
rs11234800	1.00[ASN][1000 genomes]
rs11234818	1.00[ASN][1000 genomes]
rs11602353	1.00[ASN][1000 genomes]
rs11604205	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605575	1.00[ASN][1000 genomes]
rs11606102	1.00[ASN][1000 genomes]
rs11608167	1.00[ASN][1000 genomes]
rs12362740	1.00[ASN][1000 genomes]
rs12791451	1.00[ASN][1000 genomes]
rs12798749	1.00[ASN][1000 genomes]
rs12807796	1.00[ASN][1000 genomes]
rs17159941	1.00[ASN][1000 genomes]
rs17758195	1.00[ASN][1000 genomes]
rs17758206	1.00[ASN][1000 genomes]
rs17758334	1.00[ASN][1000 genomes]
rs17758376	1.00[ASN][1000 genomes]
rs17758400	1.00[ASN][1000 genomes]
rs17758573	1.00[AFR][1000 genomes]
rs17820139	1.00[ASN][1000 genomes]
rs1815753	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2011913	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34963582	1.00[ASN][1000 genomes]
rs35666652	1.00[ASN][1000 genomes]
rs35781069	1.00[ASN][1000 genomes]
rs4307742	1.00[ASN][1000 genomes]
rs57857339	1.00[ASN][1000 genomes]
rs58399373	1.00[ASN][1000 genomes]
rs66672297	1.00[ASN][1000 genomes]
rs66827623	1.00[ASN][1000 genomes]
rs67313042	1.00[ASN][1000 genomes]
rs67588995	1.00[ASN][1000 genomes]
rs67761566	1.00[ASN][1000 genomes]
rs67939314	1.00[ASN][1000 genomes]
rs7128805	1.00[ASN][1000 genomes]
rs71465659	1.00[ASN][1000 genomes]
rs72967468	1.00[ASN][1000 genomes]
rs72967500	1.00[ASN][1000 genomes]
rs72969403	1.00[ASN][1000 genomes]
rs72969405	1.00[ASN][1000 genomes]
rs72969407	1.00[ASN][1000 genomes]
rs72969411	1.00[ASN][1000 genomes]
rs72969419	1.00[ASN][1000 genomes]
rs72969422	1.00[ASN][1000 genomes]
rs72969425	1.00[ASN][1000 genomes]
rs72969430	1.00[ASN][1000 genomes]
rs72969432	1.00[ASN][1000 genomes]
rs72969443	1.00[ASN][1000 genomes]
rs72969477	1.00[ASN][1000 genomes]
rs7934478	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv975959	chr11:86534725-86568919	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv1836220	chr11:86542005-86573310	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3433331	chr11:86556944-86561876	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86537200-86580600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:86543200-86582600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:86547800-86562400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:86549600-86581400	Weak transcription	Ovary	ovary
5	chr11:86549800-86562400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:86549800-86576400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:86550000-86575200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:86557400-86559400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:86557400-86559600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:86557400-86560000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr11:86557600-86560200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:86557800-86559800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:86558800-86560200	Enhancers	Pancreas	Pancrea
14	chr11:86558800-86562600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:86559000-86559400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr11:86559000-86559400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr11:86559000-86559400	Enhancers	HepG2	liver
18	chr11:86559000-86559600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr11:86559000-86560200	Enhancers	Left Ventricle	heart
20	chr11:86559000-86560400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:86559200-86559600	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr11:86559200-86559600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr11:86559200-86559800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:86559200-86559800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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