Variant report

Variant	rs11606102
Chromosome Location	chr11:86574784-86574785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10501629	1.00[ASN][1000 genomes]
rs11234769	1.00[ASN][1000 genomes]
rs11234776	1.00[ASN][1000 genomes]
rs11234777	1.00[ASN][1000 genomes]
rs11234778	1.00[ASN][1000 genomes]
rs11234785	1.00[ASN][1000 genomes]
rs11234798	1.00[ASN][1000 genomes]
rs11234799	1.00[ASN][1000 genomes]
rs11234800	1.00[ASN][1000 genomes]
rs11234818	1.00[ASN][1000 genomes]
rs11602353	1.00[ASN][1000 genomes]
rs11604205	1.00[ASN][1000 genomes]
rs11605575	1.00[ASN][1000 genomes]
rs11605608	1.00[ASN][1000 genomes]
rs11608167	1.00[ASN][1000 genomes]
rs12362740	1.00[ASN][1000 genomes]
rs12791451	1.00[ASN][1000 genomes]
rs12798749	1.00[ASN][1000 genomes]
rs12807796	1.00[ASN][1000 genomes]
rs17159941	1.00[ASN][1000 genomes]
rs17758195	1.00[ASN][1000 genomes]
rs17758206	1.00[ASN][1000 genomes]
rs17758334	1.00[ASN][1000 genomes]
rs17758376	1.00[ASN][1000 genomes]
rs17758400	1.00[ASN][1000 genomes]
rs17820139	1.00[ASN][1000 genomes]
rs1815753	1.00[ASN][1000 genomes]
rs2011913	1.00[ASN][1000 genomes]
rs34963582	1.00[ASN][1000 genomes]
rs35666652	1.00[ASN][1000 genomes]
rs35781069	1.00[ASN][1000 genomes]
rs4307742	1.00[ASN][1000 genomes]
rs57857339	1.00[ASN][1000 genomes]
rs58399373	1.00[ASN][1000 genomes]
rs6592313	1.00[CHB][hapmap]
rs66672297	1.00[ASN][1000 genomes]
rs66827623	1.00[ASN][1000 genomes]
rs67313042	1.00[ASN][1000 genomes]
rs67588995	1.00[ASN][1000 genomes]
rs67761566	1.00[ASN][1000 genomes]
rs67939314	1.00[ASN][1000 genomes]
rs7128805	1.00[ASN][1000 genomes]
rs71465659	1.00[ASN][1000 genomes]
rs72967468	1.00[ASN][1000 genomes]
rs72967500	1.00[ASN][1000 genomes]
rs72969403	1.00[ASN][1000 genomes]
rs72969405	1.00[ASN][1000 genomes]
rs72969407	1.00[ASN][1000 genomes]
rs72969411	1.00[ASN][1000 genomes]
rs72969419	1.00[ASN][1000 genomes]
rs72969422	1.00[ASN][1000 genomes]
rs72969425	1.00[ASN][1000 genomes]
rs72969430	1.00[ASN][1000 genomes]
rs72969432	1.00[ASN][1000 genomes]
rs72969443	1.00[ASN][1000 genomes]
rs72969470	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72969477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73512434	0.84[AMR][1000 genomes]
rs7934478	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86537200-86580600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:86543200-86582600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:86549600-86581400	Weak transcription	Ovary	ovary
4	chr11:86549800-86576400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:86550000-86575200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:86562600-86585800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:86563200-86575200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:86563200-86598800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:86563400-86575400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:86564000-86575200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:86566200-86575200	Weak transcription	Aorta	Aorta
12	chr11:86566800-86585800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr11:86568200-86575000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:86568800-86580600	Weak transcription	Adipose Nuclei	Adipose
15	chr11:86571200-86580600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr11:86571800-86575200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:86571800-86575400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr11:86573200-86575000	Weak transcription	HSMM	muscle
19	chr11:86574400-86575400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:86574400-86575600	Enhancers	Fetal Muscle Leg	muscle
21	chr11:86574400-86580800	Weak transcription	NH-A	brain

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