Variant report

Variant	rs17758206
Chromosome Location	chr11:86454323-86454324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:86187402..86190173-chr11:86451965..86454595,2	MCF-7	breast:
2	chr11:86410588..86412313-chr11:86452715..86455271,2	K562	blood:
3	chr11:86452587..86455678-chr11:86498398..86501247,3	MCF-7	breast:
4	chr11:86429172..86438482-chr11:86450202..86456550,9	MCF-7	breast:
5	chr11:86453943..86454903-chr8:120844804..120845426,2	Hela-S3	cervix:
6	chr11:86382693..86386959-chr11:86452814..86456123,3	MCF-7	breast:
7	chr11:86422351..86424027-chr11:86451990..86454405,2	MCF-7	breast:
8	chr11:86412384..86414900-chr11:86452742..86454640,3	MCF-7	breast:
9	chr11:86453173..86455061-chr11:86477105..86479906,2	MCF-7	breast:
10	chr11:86452259..86454963-chr11:86491551..86494314,2	MCF-7	breast:
11	chr11:86447300..86456471-chr11:86483287..86490697,27	MCF-7	breast:
12	chr11:86445705..86457398-chr11:86504607..86518485,46	MCF-7	breast:
13	chr11:86445788..86450763-chr11:86452280..86455324,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000255250	Chromatin interaction
ENSG00000150687	Chromatin interaction
ENSG00000064313	Chromatin interaction
ENSG00000254731	Chromatin interaction
ENSG00000151376	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10501629	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898531	1.00[CHB][hapmap]
rs10898535	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11234753	1.00[CHB][hapmap]
rs11234765	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11234767	1.00[CHB][hapmap]
rs11234768	1.00[CHB][hapmap]
rs11234769	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11234776	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234777	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234778	1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234785	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234798	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11234799	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs11234800	1.00[ASN][1000 genomes]
rs11234804	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11234806	1.00[CHB][hapmap]
rs11234818	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11602353	1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604205	1.00[ASN][1000 genomes]
rs11605575	1.00[ASN][1000 genomes]
rs11605608	1.00[ASN][1000 genomes]
rs11606102	1.00[ASN][1000 genomes]
rs11607392	1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs11608167	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs12360547	1.00[CHB][hapmap]
rs12362740	1.00[ASN][1000 genomes]
rs12365944	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12786875	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12787853	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12791451	1.00[ASN][1000 genomes]
rs12791740	1.00[CHB][hapmap]
rs12793595	1.00[CHB][hapmap]
rs12798749	1.00[ASN][1000 genomes]
rs12805405	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12807796	1.00[ASN][1000 genomes]
rs17159941	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs17758195	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17758334	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17758376	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs17758400	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs17820139	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1815753	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2000538	1.00[CHB][hapmap]
rs2011913	1.00[ASN][1000 genomes]
rs2105587	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs34963582	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35666652	1.00[ASN][1000 genomes]
rs35781069	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4307742	1.00[ASN][1000 genomes]
rs57857339	1.00[ASN][1000 genomes]
rs58399373	1.00[ASN][1000 genomes]
rs6592313	1.00[CHB][hapmap]
rs6592314	1.00[CHB][hapmap]
rs66672297	1.00[ASN][1000 genomes]
rs66827623	1.00[ASN][1000 genomes]
rs67313042	1.00[ASN][1000 genomes]
rs67588995	1.00[ASN][1000 genomes]
rs67761566	1.00[ASN][1000 genomes]
rs67939314	1.00[ASN][1000 genomes]
rs7105597	1.00[CHB][hapmap];1.00[LWK][hapmap]
rs7128682	1.00[CHB][hapmap]
rs7128805	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs71465659	1.00[ASN][1000 genomes]
rs72967468	1.00[ASN][1000 genomes]
rs72967500	1.00[ASN][1000 genomes]
rs72969403	1.00[ASN][1000 genomes]
rs72969405	1.00[ASN][1000 genomes]
rs72969407	1.00[ASN][1000 genomes]
rs72969411	1.00[ASN][1000 genomes]
rs72969419	1.00[ASN][1000 genomes]
rs72969422	1.00[ASN][1000 genomes]
rs72969425	1.00[ASN][1000 genomes]
rs72969430	1.00[ASN][1000 genomes]
rs72969432	1.00[ASN][1000 genomes]
rs72969443	1.00[ASN][1000 genomes]
rs72969477	1.00[ASN][1000 genomes]
rs7934478	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv521505	chr11:86438115-86515072	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv468775	chr11:86453415-86480716	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv555705	chr11:86453415-86480716	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86446000-86458000	Enhancers	HMEC	breast
2	chr11:86446400-86455200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr11:86446800-86455400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:86447400-86455200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:86448400-86456000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:86449000-86455000	Enhancers	Stomach Mucosa	stomach
7	chr11:86449000-86455200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:86449200-86455000	Enhancers	HepG2	liver
9	chr11:86449400-86454400	Enhancers	K562	blood
10	chr11:86449600-86455600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:86449800-86455000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:86449800-86455200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:86450200-86455200	Enhancers	Stomach Smooth Muscle	stomach
14	chr11:86450200-86459800	Enhancers	Placenta Amnion	Placenta Amnion
15	chr11:86450400-86455000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr11:86450600-86454800	Enhancers	Right Atrium	heart
17	chr11:86450600-86455200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:86450800-86455000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr11:86450800-86455200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:86451000-86454800	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr11:86451000-86455200	Enhancers	Placenta	Placenta
22	chr11:86452200-86455000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:86452200-86458000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:86452400-86454400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr11:86452400-86457600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr11:86452600-86454600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:86452600-86455200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr11:86452800-86454600	Enhancers	NH-A	brain
29	chr11:86452800-86455200	Enhancers	NHLF	lung
30	chr11:86453000-86454400	Enhancers	Aorta	Aorta
31	chr11:86453000-86454400	Enhancers	Lung	lung
32	chr11:86453000-86454600	Enhancers	Esophagus	oesophagus
33	chr11:86453000-86454600	Enhancers	Gastric	stomach
34	chr11:86453000-86454600	Enhancers	Left Ventricle	heart
35	chr11:86453000-86454600	Enhancers	HUVEC	blood vessel
36	chr11:86453000-86455000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:86453000-86457600	Weak transcription	Fetal Heart	heart
38	chr11:86453200-86455000	Flanking Active TSS	A549	lung
39	chr11:86453400-86454400	Weak transcription	Fetal Stomach	stomach
40	chr11:86453400-86454800	Enhancers	Adipose Nuclei	Adipose
41	chr11:86453400-86455200	Flanking Active TSS	Hela-S3	cervix
42	chr11:86453400-86455400	Enhancers	HSMM	muscle
43	chr11:86453400-86455400	Enhancers	NHEK	skin
44	chr11:86453400-86459200	Weak transcription	Brain Anterior Caudate	brain
45	chr11:86453400-86459600	Weak transcription	Fetal Muscle Trunk	muscle
46	chr11:86453600-86454800	Weak transcription	Brain Angular Gyrus	brain
47	chr11:86453800-86454400	Enhancers	Psoas Muscle	Psoas
48	chr11:86453800-86454600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr11:86453800-86454800	Weak transcription	Right Ventricle	heart
50	chr11:86453800-86459200	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links