Variant report

Variant	rs11607392
Chromosome Location	chr11:86437417-86437418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr11:86437086-86437942	SK-N-SH	brain:	n/a	n/a
2	PBX3	chr11:86437318-86437922	SK-N-SH	brain:	n/a	n/a
3	TEAD4	chr11:86437216-86437838	ECC-1	luminal epithelium:	n/a	n/a
4	FOS	chr11:86437276-86437860	MCF10A-Er-Src	breast:	n/a	n/a
5	FOSL2	chr11:86437204-86437901	A549	lung:	n/a	n/a
6	FOS	chr11:86437200-86437808	MCF10A-Er-Src	breast:	n/a	n/a
7	FOSL2	chr11:86437406-86437702	A549	lung:	n/a	n/a
8	FOSL1	chr11:86437204-86437996	HCT-116	colon:	n/a	chr11:86437904-86437911
9	SP1	chr11:86437230-86437906	A549	lung:	n/a	n/a
10	FOS	chr11:86437238-86437772	Hela-S3	cervix:	n/a	n/a
11	EP300	chr11:86437244-86438041	ECC-1	luminal epithelium:	n/a	n/a
12	JUND	chr11:86437317-86437873	HCT-116	colon:	n/a	n/a
13	CBX3	chr11:86437302-86437945	HCT-116	colon:	n/a	n/a
14	MAX	chr11:86437232-86438388	A549	lung:	n/a	n/a
15	JUND	chr11:86437285-86437763	Hela-S3	cervix:	n/a	n/a
16	STAT3	chr11:86437403-86437810	MCF10A-Er-Src	breast:	n/a	n/a
17	POLR2A	chr11:86437377-86437764	SK-N-SH	brain:	n/a	n/a
18	FOSL2	chr11:86437242-86437898	SK-N-SH	brain:	n/a	n/a
19	GATA3	chr11:86437236-86438786	SK-N-SH	brain:	n/a	n/a
20	EP300	chr11:86437102-86437917	SK-N-SH	brain:	n/a	n/a
21	FOS	chr11:86437193-86437851	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000255250	TF binding region

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10501629	1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs10898527	1.00[ASN][1000 genomes]
rs10898528	1.00[ASN][1000 genomes]
rs10898531	1.00[CHB][hapmap]
rs10898535	1.00[CHB][hapmap]
rs11234753	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11234760	1.00[ASN][1000 genomes]
rs11234761	1.00[ASN][1000 genomes]
rs11234765	1.00[CHB][hapmap]
rs11234767	1.00[CHB][hapmap]
rs11234768	1.00[CHB][hapmap]
rs11234778	1.00[CHB][hapmap]
rs11234798	1.00[CHB][hapmap]
rs11234799	1.00[CHB][hapmap]
rs11234806	1.00[CHB][hapmap]
rs11234818	1.00[CHB][hapmap]
rs11602353	1.00[CHB][hapmap]
rs11608167	1.00[CHB][hapmap]
rs12360547	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12786875	1.00[CHB][hapmap]
rs12787853	1.00[CHB][hapmap]
rs12791740	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12793595	1.00[CHB][hapmap]
rs12805405	1.00[CHB][hapmap]
rs17159941	1.00[CHB][hapmap]
rs17758195	1.00[CHB][hapmap]
rs17758206	1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs17758334	1.00[CHB][hapmap]
rs17758376	1.00[CHB][hapmap]
rs17758400	1.00[CHB][hapmap]
rs17819945	1.00[ASN][1000 genomes]
rs17820139	1.00[CHB][hapmap]
rs1815753	1.00[CHB][hapmap]
rs2000538	1.00[CHB][hapmap]
rs2105587	1.00[CHB][hapmap]
rs34343472	1.00[ASN][1000 genomes]
rs6592313	1.00[CHB][hapmap]
rs6592314	1.00[CHB][hapmap]
rs7105597	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7108254	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs7128682	1.00[CHB][hapmap]
rs7128805	1.00[CHB][hapmap]
rs71465652	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86407000-86451600	Weak transcription	Left Ventricle	heart
2	chr11:86424200-86449800	Weak transcription	Pancreas	Pancrea
3	chr11:86431800-86438200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:86434800-86446400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:86435200-86439000	Enhancers	HMEC	breast
6	chr11:86436400-86438800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:86436400-86439000	Enhancers	Hela-S3	cervix
8	chr11:86436600-86437800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:86436600-86438000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:86436600-86438000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:86436600-86438400	Enhancers	NHEK	skin
12	chr11:86436600-86439600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr11:86436800-86437800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:86436800-86437800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr11:86437200-86437600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:86437200-86437600	Enhancers	NH-A	brain
17	chr11:86437200-86437800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:86437200-86437800	Enhancers	HSMM	muscle
19	chr11:86437200-86437800	Enhancers	Osteobl	bone
20	chr11:86437200-86440400	Enhancers	A549	lung

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