Variant report

Variant	rs11234818
Chromosome Location	chr11:86524821-86524822
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86339668..86341867-chr11:86523137..86524970,2	MCF-7	breast:
2	chr11:86519601..86524011-chr11:86524298..86526997,5	MCF-7	breast:
3	chr11:86381955..86384212-chr11:86522586..86525573,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151376	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10501629	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10898531	1.00[CHB][hapmap]
rs10898535	1.00[CHB][hapmap]
rs11234753	1.00[CHB][hapmap]
rs11234765	1.00[CHB][hapmap]
rs11234767	1.00[CHB][hapmap]
rs11234768	1.00[CHB][hapmap]
rs11234769	1.00[ASN][1000 genomes]
rs11234776	1.00[ASN][1000 genomes]
rs11234777	1.00[ASN][1000 genomes]
rs11234778	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11234785	1.00[ASN][1000 genomes]
rs11234798	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11234799	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11234800	1.00[ASN][1000 genomes]
rs11234806	1.00[CHB][hapmap]
rs11602353	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11604205	1.00[ASN][1000 genomes]
rs11605575	1.00[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605608	1.00[ASN][1000 genomes]
rs11606102	1.00[ASN][1000 genomes]
rs11607392	1.00[CHB][hapmap]
rs11608167	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360547	1.00[CHB][hapmap]
rs12362740	1.00[ASN][1000 genomes]
rs12786875	1.00[CHB][hapmap]
rs12787853	1.00[CHB][hapmap]
rs12791451	1.00[ASN][1000 genomes]
rs12791740	1.00[CHB][hapmap]
rs12793595	1.00[CHB][hapmap]
rs12798749	1.00[ASN][1000 genomes]
rs12805405	1.00[CHB][hapmap]
rs12807796	1.00[ASN][1000 genomes]
rs17159941	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17758195	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17758206	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17758334	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17758376	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17758400	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17820139	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1815753	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2000538	1.00[CHB][hapmap]
rs2011913	1.00[ASN][1000 genomes]
rs2105587	1.00[CHB][hapmap]
rs34963582	1.00[ASN][1000 genomes]
rs35666652	1.00[ASN][1000 genomes]
rs35781069	1.00[ASN][1000 genomes]
rs4307742	1.00[ASN][1000 genomes]
rs57857339	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58399373	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592313	1.00[CHB][hapmap]
rs6592314	1.00[CHB][hapmap]
rs66672297	1.00[ASN][1000 genomes]
rs66827623	1.00[ASN][1000 genomes]
rs67313042	1.00[ASN][1000 genomes]
rs67588995	1.00[ASN][1000 genomes]
rs67761566	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67939314	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105597	1.00[CHB][hapmap]
rs7128682	1.00[CHB][hapmap]
rs7128805	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs71465659	1.00[ASN][1000 genomes]
rs72967468	1.00[ASN][1000 genomes]
rs72967500	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72969403	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72969405	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72969407	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72969411	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72969419	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72969422	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72969425	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72969430	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72969432	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72969443	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72969477	1.00[ASN][1000 genomes]
rs7934478	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv523704	chr11:86508928-86528437	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2760199	chr11:86512312-86531118	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86512000-86527000	Weak transcription	Spleen	Spleen
2	chr11:86513600-86525600	Weak transcription	Colonic Mucosa	Colon
3	chr11:86514000-86525400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr11:86514000-86530000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr11:86514200-86525600	Weak transcription	Fetal Lung	lung
6	chr11:86515800-86525200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:86516600-86525400	Weak transcription	Fetal Heart	heart
8	chr11:86516600-86527200	Weak transcription	Adipose Nuclei	Adipose
9	chr11:86516800-86527200	Weak transcription	Left Ventricle	heart
10	chr11:86517200-86525400	Weak transcription	Fetal Muscle Leg	muscle
11	chr11:86517200-86529800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:86519200-86525400	Weak transcription	Aorta	Aorta
13	chr11:86519800-86525800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr11:86520000-86526800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr11:86520000-86549200	Weak transcription	Ovary	ovary
16	chr11:86521000-86551400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr11:86521600-86528400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:86521800-86525600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:86521800-86527800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:86522400-86525600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr11:86522800-86544400	Weak transcription	Fetal Kidney	kidney
22	chr11:86523000-86525600	Weak transcription	Fetal Stomach	stomach
23	chr11:86523000-86525800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:86523200-86525200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr11:86523200-86525400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr11:86523200-86525600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr11:86523400-86525200	Weak transcription	HSMM	muscle
28	chr11:86523400-86525400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr11:86523400-86525600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:86523400-86525600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:86523400-86525600	Weak transcription	Lung	lung
32	chr11:86523400-86525600	Weak transcription	Osteobl	bone
33	chr11:86523400-86525800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr11:86523400-86525800	Weak transcription	Hela-S3	cervix
35	chr11:86523400-86526600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:86523400-86526800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr11:86523400-86526800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:86523400-86526800	Weak transcription	Gastric	stomach
39	chr11:86523400-86527200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr11:86523400-86527200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:86523600-86525600	Weak transcription	Psoas Muscle	Psoas
42	chr11:86523600-86525600	Weak transcription	NH-A	brain
43	chr11:86523800-86525600	Weak transcription	Right Atrium	heart
44	chr11:86523800-86528400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr11:86524000-86525000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr11:86524000-86525400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr11:86524000-86525400	Weak transcription	NHLF	lung
48	chr11:86524200-86525200	Weak transcription	HMEC	breast
49	chr11:86524200-86525400	Weak transcription	Stomach Mucosa	stomach
50	chr11:86524200-86525400	Weak transcription	HSMMtube	muscle

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