The 2.0 version of rSNPBase

Variant report

Variant rs57857339
Chromosome Location chr11:86517924-86517925
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:86512000-86527000 Weak transcription Spleen Spleen
2 chr11:86512600-86518600 Weak transcription Small Intestine intestine
3 chr11:86512600-86520600 Weak transcription Brain Inferior Temporal Lobe brain
4 chr11:86512800-86518400 Weak transcription Fetal Muscle Trunk muscle
5 chr11:86512800-86522800 Weak transcription Pancreas Pancrea
6 chr11:86513200-86519200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
7 chr11:86513400-86520400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
8 chr11:86513600-86518600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr11:86513600-86518600 Weak transcription Lung lung
10 chr11:86513600-86525600 Weak transcription Colonic Mucosa Colon
11 chr11:86513800-86522200 Weak transcription iPS-18 Cell Line embryonic stem cell
12 chr11:86513800-86522600 Weak transcription HUES6 Cell Line embryonic stem cell
13 chr11:86514000-86518200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr11:86514000-86518600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
15 chr11:86514000-86523200 Weak transcription Psoas Muscle Psoas
16 chr11:86514000-86525400 Weak transcription Skeletal Muscle Male skeletal muscle
17 chr11:86514000-86530000 Weak transcription Rectal Mucosa Donor 29 rectum
18 chr11:86514200-86520400 Weak transcription Cortex derived primary cultured neurospheres brain
19 chr11:86514200-86525600 Weak transcription Fetal Lung lung
20 chr11:86514600-86521400 Weak transcription ES-WA7 Cell Line embryonic stem cell
21 chr11:86514800-86518200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr11:86514800-86519200 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
23 chr11:86515000-86519600 Weak transcription Fetal Brain Male brain
24 chr11:86515000-86520000 Genic enhancers Hela-S3 cervix
25 chr11:86515200-86519000 Enhancers Colon Smooth Muscle Colon
26 chr11:86515600-86519200 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr11:86515600-86521600 Genic enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr11:86515800-86525200 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr11:86516000-86518600 Enhancers Primary T cells fromperipheralblood blood
30 chr11:86516000-86518600 Enhancers Duodenum Smooth Muscle Duodenum
31 chr11:86516000-86518800 Enhancers Primary T killer naive cells fromperipheralblood blood
32 chr11:86516200-86518000 Enhancers Primary T killer memory cells from peripheral blood blood
33 chr11:86516200-86518800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
34 chr11:86516200-86519200 Enhancers Placenta Amnion Placenta Amnion
35 chr11:86516200-86519600 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
36 chr11:86516200-86523400 Genic enhancers H9 Derived Neuron Cultured Cells ES cell derived
37 chr11:86516400-86518600 Weak transcription Ovary ovary
38 chr11:86516400-86518800 Weak transcription Aorta Aorta
39 chr11:86516400-86519400 Weak transcription Breast Myoepithelial Primary Cells Breast
40 chr11:86516600-86522800 Weak transcription Skeletal Muscle Female skeletal muscle
41 chr11:86516600-86525400 Weak transcription Fetal Heart heart
42 chr11:86516600-86527200 Weak transcription Adipose Nuclei Adipose
43 chr11:86516800-86518400 Weak transcription Fetal Intestine Small intestine
44 chr11:86516800-86518400 Genic enhancers Stomach Smooth Muscle stomach
45 chr11:86516800-86518600 Weak transcription Fetal Stomach stomach
46 chr11:86516800-86518800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr11:86516800-86521600 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
48 chr11:86516800-86527200 Weak transcription Left Ventricle heart
49 chr11:86517000-86518800 Genic enhancers HUVEC blood vessel
50 chr11:86517200-86518000 Bivalent Enhancer hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015