Variant report

Variant	rs11608188
Chromosome Location	chr11:86618374-86618375
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86613765..86616504-chr11:86618194..86621131,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10128549	1.00[ASN][1000 genomes]
rs10501629	1.00[CHB][hapmap]
rs10898531	1.00[CHB][hapmap]
rs10898535	1.00[CHB][hapmap]
rs11234753	1.00[CHB][hapmap]
rs11234765	1.00[CHB][hapmap]
rs11234767	1.00[CHB][hapmap]
rs11234768	1.00[CHB][hapmap]
rs11234778	1.00[CHB][hapmap]
rs11234798	1.00[CHB][hapmap]
rs11234799	1.00[CHB][hapmap]
rs11234806	1.00[CHB][hapmap]
rs11234818	1.00[CHB][hapmap]
rs11601476	1.00[ASN][1000 genomes]
rs11602353	1.00[CHB][hapmap]
rs11602556	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11602664	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11604559	1.00[ASN][1000 genomes]
rs11604650	1.00[ASN][1000 genomes]
rs11607392	1.00[CHB][hapmap]
rs11608167	1.00[CHB][hapmap]
rs12360547	1.00[CHB][hapmap]
rs12786875	1.00[CHB][hapmap]
rs12787853	1.00[CHB][hapmap]
rs12791740	1.00[CHB][hapmap]
rs12793595	1.00[CHB][hapmap]
rs12805405	1.00[CHB][hapmap]
rs17159941	1.00[CHB][hapmap]
rs17758195	1.00[CHB][hapmap]
rs17758206	1.00[CHB][hapmap]
rs17758334	1.00[CHB][hapmap]
rs17758376	1.00[CHB][hapmap]
rs17758400	1.00[CHB][hapmap]
rs17758573	1.00[ASN][1000 genomes]
rs17820139	1.00[CHB][hapmap]
rs1815753	1.00[CHB][hapmap]
rs2000538	1.00[CHB][hapmap]
rs2105587	1.00[CHB][hapmap]
rs56119716	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56156145	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6592313	1.00[CHB][hapmap]
rs6592314	1.00[CHB][hapmap]
rs7105597	1.00[CHB][hapmap]
rs7128682	1.00[CHB][hapmap]
rs7128805	1.00[CHB][hapmap]
rs72957504	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72957509	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72957525	1.00[ASN][1000 genomes]
rs72957535	1.00[ASN][1000 genomes]
rs72959670	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72959672	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72959695	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86578200-86627400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:86597600-86620800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:86597600-86627400	Weak transcription	Ovary	ovary
4	chr11:86599600-86627600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:86600600-86627600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:86602400-86627600	Weak transcription	Left Ventricle	heart
7	chr11:86606800-86623000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:86608200-86623200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:86608400-86626000	Weak transcription	Fetal Lung	lung
10	chr11:86608400-86627400	Weak transcription	NHLF	lung
11	chr11:86608800-86625800	Weak transcription	Fetal Stomach	stomach
12	chr11:86613600-86620000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:86613600-86620200	Weak transcription	Fetal Muscle Leg	muscle
14	chr11:86614200-86620600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:86615600-86627600	Weak transcription	Pancreas	Pancrea
16	chr11:86617600-86627400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:86617800-86618600	Weak transcription	Aorta	Aorta

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