Variant report

Variant	rs11677489
Chromosome Location	chr2:210632900-210632901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10182553	0.91[ASN][1000 genomes]
rs10183590	0.81[EUR][1000 genomes]
rs10183604	0.81[EUR][1000 genomes]
rs10490021	0.81[EUR][1000 genomes]
rs10490022	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10804176	0.85[EUR][1000 genomes]
rs10932305	0.85[EUR][1000 genomes]
rs10932306	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11674672	0.93[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11674950	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11677476	0.93[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11677975	0.81[EUR][1000 genomes]
rs11678044	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11679862	0.93[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11680007	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11680964	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11682692	0.81[EUR][1000 genomes]
rs11687043	0.88[EUR][1000 genomes]
rs11689771	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11692345	0.88[EUR][1000 genomes]
rs11692608	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11693202	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11884376	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11887161	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11898077	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11900602	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12105654	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12105660	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12613705	0.83[EUR][1000 genomes]
rs12614031	0.81[EUR][1000 genomes]
rs12615516	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12619203	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12619253	0.81[EUR][1000 genomes]
rs12619409	0.85[EUR][1000 genomes]
rs12622305	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1476876	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1476877	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16843421	0.81[EUR][1000 genomes]
rs16843453	0.81[EUR][1000 genomes]
rs16843515	0.81[EUR][1000 genomes]
rs16843544	0.85[EUR][1000 genomes]
rs16843614	0.85[EUR][1000 genomes]
rs16843618	0.85[EUR][1000 genomes]
rs16843626	0.85[EUR][1000 genomes]
rs2098204	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2215624	0.88[EUR][1000 genomes]
rs2215625	0.88[EUR][1000 genomes]
rs2239553	0.85[EUR][1000 genomes]
rs2239672	0.81[EUR][1000 genomes]
rs2268042	0.85[EUR][1000 genomes]
rs2284360	0.85[EUR][1000 genomes]
rs2300154	0.85[EUR][1000 genomes]
rs35337581	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35872449	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3754597	0.85[EUR][1000 genomes]
rs3768810	0.81[EUR][1000 genomes]
rs3768813	0.81[EUR][1000 genomes]
rs3768814	0.81[EUR][1000 genomes]
rs3768826	0.81[EUR][1000 genomes]
rs3768835	0.81[EUR][1000 genomes]
rs3820746	0.82[EUR][1000 genomes]
rs3886931	0.81[EUR][1000 genomes]
rs4672559	0.85[EUR][1000 genomes]
rs56825045	0.85[EUR][1000 genomes]
rs57305145	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57542539	0.85[EUR][1000 genomes]
rs57637604	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57853945	0.85[EUR][1000 genomes]
rs57990979	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58248939	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58295121	0.85[EUR][1000 genomes]
rs58525719	0.85[EUR][1000 genomes]
rs58779755	0.85[EUR][1000 genomes]
rs59155421	0.81[EUR][1000 genomes]
rs59555743	0.85[EUR][1000 genomes]
rs60161291	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60640585	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61333809	0.85[EUR][1000 genomes]
rs61356588	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61420319	0.85[EUR][1000 genomes]
rs6716831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6720659	0.81[EUR][1000 genomes]
rs6742314	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73074733	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73074750	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074751	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074763	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074778	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73074779	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73074784	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73074787	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73074791	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73074801	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73076704	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73076710	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs741006	0.81[EUR][1000 genomes]
rs7564369	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7569393	0.85[EUR][1000 genomes]
rs7594601	0.85[EUR][1000 genomes]
rs7595017	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs975551	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs975552	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210632600-210636200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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