Variant report
| Variant | rs11737002 |
|---|---|
| Chromosome Location | chr4:85459266-85459267 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:85458357..85460344-chr4:85467906..85470150,2 | MCF-7 | breast: |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-NKX6-1-5 | chr4:85459239-85459450 | NONHSAT097240 |
| 2 | lnc-NKX6-1-5 | chr4:85459239-85459450 | FPKM1_group_23682_transcript_1 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10516725 | 1.00[AMR][1000 genomes] |
| rs11721913 | 1.00[AMR][1000 genomes] |
| rs11725803 | 1.00[AMR][1000 genomes] |
| rs11726744 | 1.00[AMR][1000 genomes] |
| rs11731505 | 1.00[AMR][1000 genomes] |
| rs17367317 | 1.00[AMR][1000 genomes] |
| rs17367775 | 1.00[AMR][1000 genomes] |
| rs17375853 | 1.00[AMR][1000 genomes] |
| rs17376090 | 1.00[AMR][1000 genomes] |
| rs17376293 | 1.00[AMR][1000 genomes] |
| rs36068434 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829998 | chr4:85299693-85473450 | Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
