Variant report

Variant	rs17376293
Chromosome Location	chr4:85565937-85565938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85564288..85566182-chr4:85568579..85571461,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10516725	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11721913	1.00[AMR][1000 genomes]
rs11725803	1.00[AMR][1000 genomes]
rs11726731	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11726744	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11731505	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11733678	1.00[ASN][1000 genomes]
rs11733881	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11737002	1.00[AMR][1000 genomes]
rs11939816	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs11944727	0.85[EUR][1000 genomes]
rs11944769	0.85[EUR][1000 genomes]
rs1443075	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs17367317	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17367775	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368157	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368458	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368902	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17375853	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17376048	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs17376090	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17376461	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376489	0.91[EUR][1000 genomes]
rs17376946	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.85[YRI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377338	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377352	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377666	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34548715	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35767732	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36068434	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs41524654	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs4569746	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73831542	0.85[EUR][1000 genomes]
rs7699828	0.82[EUR][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85518600-85574800	Weak transcription	Stomach Mucosa	stomach
2	chr4:85526800-85583000	Weak transcription	Gastric	stomach
3	chr4:85529400-85581600	Weak transcription	Ovary	ovary
4	chr4:85529600-85587600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:85532400-85571200	Weak transcription	Pancreas	Pancrea
6	chr4:85536800-85570200	Weak transcription	Fetal Stomach	stomach
7	chr4:85537200-85568600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:85538600-85568600	Weak transcription	Brain Anterior Caudate	brain
9	chr4:85544600-85568000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr4:85544600-85572400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr4:85545200-85576400	Weak transcription	Esophagus	oesophagus
12	chr4:85546600-85570400	Weak transcription	Small Intestine	intestine
13	chr4:85555200-85568800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr4:85556600-85570400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr4:85556600-85572200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:85556800-85570600	Weak transcription	Lung	lung
17	chr4:85556800-85570600	Weak transcription	NHEK	skin
18	chr4:85557400-85566800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr4:85557600-85569200	Weak transcription	HMEC	breast
20	chr4:85559800-85567800	Weak transcription	Fetal Heart	heart
21	chr4:85560600-85567000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr4:85560600-85568600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr4:85560600-85568600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr4:85560600-85570600	Weak transcription	Left Ventricle	heart
25	chr4:85560800-85566400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr4:85561400-85570200	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr4:85562000-85567200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr4:85562400-85566000	Strong transcription	Duodenum Mucosa	Duodenum
29	chr4:85563000-85567400	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr4:85563000-85568400	Weak transcription	Brain Hippocampus Middle	brain
31	chr4:85563400-85568000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr4:85563400-85570600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr4:85563600-85570600	Weak transcription	Fetal Intestine Small	intestine
34	chr4:85564200-85568600	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr4:85564800-85566600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr4:85564800-85567400	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr4:85564800-85568600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr4:85564800-85568600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr4:85564800-85587800	Weak transcription	Fetal Kidney	kidney
40	chr4:85565000-85570600	Weak transcription	Placenta	Placenta
41	chr4:85565400-85566600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr4:85565400-85568400	Weak transcription	Fetal Intestine Large	intestine
43	chr4:85565400-85568800	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr4:85565400-85570600	Weak transcription	Aorta	Aorta
45	chr4:85565600-85568600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr4:85565600-85568800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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