Variant report

Variant	rs17368458
Chromosome Location	chr4:85675411-85675412
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85673481..85676586-chr4:85887682..85889836,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180769	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11726731	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11733678	0.96[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11733881	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009337	1.00[ASN][1000 genomes]
rs17367775	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368157	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368902	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376293	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376461	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376489	0.94[EUR][1000 genomes]
rs17376946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377338	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377352	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377666	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34548715	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35767732	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4569746	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv532738	chr4:85590841-85777997	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv427684	chr4:85668487-85863446	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85615000-85677600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:85619200-85726000	Weak transcription	Hela-S3	cervix
3	chr4:85636400-85701200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr4:85642800-85678000	Weak transcription	Gastric	stomach
5	chr4:85648000-85676200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:85651000-85676800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:85651000-85678600	Strong transcription	Placenta	Placenta
8	chr4:85652200-85678400	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:85652200-85678400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:85652200-85679200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr4:85652400-85679200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:85652600-85678400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:85652600-85678600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:85657000-85704200	Weak transcription	Psoas Muscle	Psoas
15	chr4:85658000-85676600	Strong transcription	Fetal Intestine Large	intestine
16	chr4:85659800-85678400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:85663200-85678400	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr4:85664000-85703400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr4:85664000-85703600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr4:85664200-85703600	Weak transcription	Right Ventricle	heart
21	chr4:85665800-85678400	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr4:85666000-85676600	Strong transcription	Adipose Nuclei	Adipose
23	chr4:85666200-85677200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr4:85666600-85676600	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr4:85666800-85676400	Strong transcription	Brain Germinal Matrix	brain
26	chr4:85667600-85678400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr4:85667600-85678600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr4:85667800-85678400	Strong transcription	Duodenum Smooth Muscle	Duodenum
29	chr4:85668000-85678400	Strong transcription	H1 Cell Line	embryonic stem cell
30	chr4:85668200-85675800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr4:85668200-85675800	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr4:85668200-85676600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr4:85668200-85678400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr4:85668400-85676800	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr4:85668400-85678400	Strong transcription	HUVEC	blood vessel
36	chr4:85668600-85703800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr4:85668800-85678400	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr4:85668800-85680000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr4:85669600-85703600	Weak transcription	Aorta	Aorta
40	chr4:85670400-85677400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr4:85670600-85675600	Weak transcription	Stomach Mucosa	stomach
42	chr4:85670600-85700600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr4:85670800-85676200	Strong transcription	HMEC	breast
44	chr4:85671000-85676400	Weak transcription	A549	lung
45	chr4:85671800-85678400	Strong transcription	Brain Inferior Temporal Lobe	brain
46	chr4:85672000-85678600	Strong transcription	Liver	Liver
47	chr4:85672200-85676600	Strong transcription	Placenta Amnion	Placenta Amnion
48	chr4:85672200-85678400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr4:85672200-85678600	Strong transcription	HSMM	muscle
50	chr4:85672200-85702400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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