Variant report

Variant	rs17377666
Chromosome Location	chr4:85777421-85777422
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10002152	1.00[ASN][1000 genomes]
rs11097036	1.00[ASN][1000 genomes]
rs11726731	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11733678	1.00[ASN][1000 genomes]
rs11733881	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.81[TSI][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11734281	1.00[ASN][1000 genomes]
rs11937574	1.00[ASN][1000 genomes]
rs17009337	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17367775	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368157	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368458	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368902	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376293	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376461	1.00[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376489	0.94[EUR][1000 genomes]
rs17376946	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377338	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377352	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34548715	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35767732	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4235074	1.00[ASN][1000 genomes]
rs4235075	1.00[ASN][1000 genomes]
rs4569746	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4613556	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv532738	chr4:85590841-85777997	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv427684	chr4:85668487-85863446	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85701600-85783000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr4:85709000-85781600	Weak transcription	Esophagus	oesophagus
3	chr4:85722200-85787600	Weak transcription	Gastric	stomach
4	chr4:85723000-85821000	Weak transcription	Pancreas	Pancrea
5	chr4:85724000-85781400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:85724000-85786600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:85727800-85783200	Weak transcription	Colonic Mucosa	Colon
8	chr4:85731400-85791600	Weak transcription	Lung	lung
9	chr4:85736400-85790600	Weak transcription	NHEK	skin
10	chr4:85742600-85783200	Weak transcription	Fetal Brain Male	brain
11	chr4:85751600-85783000	Weak transcription	Stomach Mucosa	stomach
12	chr4:85753200-85783400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr4:85760800-85783400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:85761400-85780200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr4:85762000-85781400	Weak transcription	Fetal Stomach	stomach
16	chr4:85770000-85777600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr4:85770000-85786200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr4:85770000-85792800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:85770200-85787000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:85770600-85779400	Weak transcription	Fetal Brain Female	brain
21	chr4:85770600-85780200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr4:85770600-85786000	Weak transcription	Psoas Muscle	Psoas
23	chr4:85770600-85787800	Weak transcription	Right Ventricle	heart
24	chr4:85771000-85780200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr4:85771000-85780200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr4:85771000-85780400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr4:85771000-85780400	Weak transcription	Fetal Kidney	kidney
28	chr4:85771000-85783600	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr4:85771000-85791400	Weak transcription	HMEC	breast
30	chr4:85771000-85791600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr4:85771200-85777600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr4:85771200-85777600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr4:85771200-85779000	Weak transcription	Fetal Intestine Large	intestine
34	chr4:85771200-85781000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr4:85771200-85781400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr4:85771200-85781400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr4:85771200-85783000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr4:85771200-85783200	Weak transcription	Ovary	ovary
39	chr4:85771200-85791200	Weak transcription	A549	lung
40	chr4:85771200-85798200	Weak transcription	Left Ventricle	heart
41	chr4:85771200-85803200	Weak transcription	Brain Germinal Matrix	brain
42	chr4:85771400-85778800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr4:85771400-85778800	Weak transcription	Placenta	Placenta
44	chr4:85771400-85779400	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr4:85771400-85780000	Weak transcription	Liver	Liver
46	chr4:85771400-85780400	Weak transcription	NHDF-Ad	bronchial
47	chr4:85771600-85791600	Weak transcription	HepG2	liver
48	chr4:85772000-85778800	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr4:85773600-85778400	Weak transcription	HSMM	muscle
50	chr4:85773600-85780000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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