Variant report

Variant	rs34548715
Chromosome Location	chr4:85708792-85708793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85708754..85711752-chr4:85713766..85715431,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10516725	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11726731	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11733678	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11733881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11939816	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1443075	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.88[TSI][hapmap]
rs17009337	1.00[ASN][1000 genomes]
rs17367317	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.88[TSI][hapmap];0.85[YRI][hapmap]
rs17367775	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.88[TSI][hapmap];0.85[YRI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368458	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17375853	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.88[TSI][hapmap];0.85[YRI][hapmap]
rs17376048	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.88[TSI][hapmap]
rs17376090	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.88[TSI][hapmap];0.85[YRI][hapmap]
rs17376293	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.85[YRI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376489	0.94[EUR][1000 genomes]
rs17376946	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377338	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377352	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377666	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35767732	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41524654	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.88[TSI][hapmap]
rs4569746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv532738	chr4:85590841-85777997	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv427684	chr4:85668487-85863446	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85619200-85726000	Weak transcription	Hela-S3	cervix
2	chr4:85683800-85732000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr4:85684800-85725000	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr4:85688800-85725600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:85689600-85717200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:85690000-85722000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr4:85690800-85725600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr4:85691000-85724800	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:85691600-85712200	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:85691600-85718400	Strong transcription	Placenta	Placenta
11	chr4:85691800-85716800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:85692000-85710400	Strong transcription	HUVEC	blood vessel
13	chr4:85692800-85709800	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr4:85694400-85711200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr4:85695200-85718000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr4:85696400-85757000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr4:85697400-85709200	Strong transcription	Rectal Mucosa Donor 31	rectum
18	chr4:85697400-85772800	Weak transcription	Small Intestine	intestine
19	chr4:85697800-85709000	Strong transcription	Duodenum Smooth Muscle	Duodenum
20	chr4:85697800-85709600	Strong transcription	Fetal Lung	lung
21	chr4:85698000-85724600	Strong transcription	Liver	Liver
22	chr4:85699000-85710000	Strong transcription	Fetal Brain Female	brain
23	chr4:85700000-85716200	Strong transcription	Adipose Nuclei	Adipose
24	chr4:85700200-85724600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:85700400-85709000	Strong transcription	Brain Cingulate Gyrus	brain
26	chr4:85700400-85709800	Strong transcription	Brain Hippocampus Middle	brain
27	chr4:85700400-85709800	Strong transcription	NHDF-Ad	bronchial
28	chr4:85700400-85710000	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr4:85700400-85711400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr4:85700400-85716400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr4:85700400-85718000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr4:85700600-85709000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr4:85700600-85709000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr4:85700600-85709200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr4:85700600-85709200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr4:85700600-85709200	Strong transcription	Fetal Muscle Trunk	muscle
37	chr4:85700600-85709200	Strong transcription	Left Ventricle	heart
38	chr4:85700600-85709800	Strong transcription	Brain Anterior Caudate	brain
39	chr4:85700600-85711600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr4:85700600-85712200	Strong transcription	Fetal Muscle Leg	muscle
41	chr4:85700600-85712600	Strong transcription	Fetal Intestine Large	intestine
42	chr4:85700800-85709000	Strong transcription	Brain Angular Gyrus	brain
43	chr4:85700800-85709000	Strong transcription	Brain Substantia Nigra	brain
44	chr4:85700800-85709000	Strong transcription	Lung	lung
45	chr4:85700800-85709000	Strong transcription	Ovary	ovary
46	chr4:85700800-85709200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr4:85700800-85709800	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr4:85700800-85709800	Strong transcription	Brain Inferior Temporal Lobe	brain
49	chr4:85700800-85711600	Strong transcription	Osteobl	bone
50	chr4:85701200-85709200	Strong transcription	Stomach Smooth Muscle	stomach

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