Variant report

Variant	rs41524654
Chromosome Location	chr4:85524037-85524038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:85502612..85505870-chr4:85521157..85526091,6	MCF-7	breast:
2	chr4:85522392..85524948-chr4:85526701..85529127,2	MCF-7	breast:
3	chr4:85523808..85526163-chr4:85537761..85540086,2	MCF-7	breast:
4	chr4:85523348..85525094-chr4:85525638..85528361,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163624	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10516725	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11721913	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11725803	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11726744	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11731505	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11939816	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944727	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944769	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17367317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17367775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs17368157	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.88[TSI][hapmap]
rs17375734	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17375853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17376293	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs17376461	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17376946	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs35023321	0.81[EUR][1000 genomes]
rs36068434	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73831542	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699828	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830333	chr4:85520643-85545644	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85508800-85531000	Weak transcription	Pancreas	Pancrea
2	chr4:85512000-85531000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:85515400-85544400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:85515800-85530600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:85517800-85531400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:85518000-85530600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:85518000-85531200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:85518200-85529800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:85518600-85526000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr4:85518600-85536200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:85518600-85574800	Weak transcription	Stomach Mucosa	stomach
12	chr4:85518800-85531000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:85519000-85530600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr4:85519000-85536000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:85519200-85527000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:85519600-85524400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr4:85519600-85527400	Weak transcription	NHEK	skin
18	chr4:85520200-85527400	Weak transcription	HMEC	breast
19	chr4:85520400-85527600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:85520400-85527800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:85520400-85527800	Weak transcription	Fetal Intestine Small	intestine
22	chr4:85520400-85529200	Weak transcription	Fetal Intestine Large	intestine
23	chr4:85520400-85529800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr4:85520400-85559400	Weak transcription	Fetal Heart	heart

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